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Report for Sequence Feature Glyma06g06080

Feature Type:gene_model
Chromosome:Gm06
Start:4343554
stop:4348402
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g06080
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26260AT Annotation by Michelle Graham. TAIR10: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 | chr2:11178237-11182872 FORWARD LENGTH=564 SoyBaseE_val: 0ISS
GO:0006694GO-bp Annotation by Michelle Graham. GO Biological Process: steroid biosynthetic process SoyBaseN/AISS
GO:0016126GO-bp Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process SoyBaseN/AISS
GO:0019745GO-bp Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003854GO-mf Annotation by Michelle Graham. GO Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity SoyBaseN/AISS
GO:0016616GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor SoyBaseN/AISS
GO:0047012GO-mf Annotation by Michelle Graham. GO Molecular Function: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity SoyBaseN/AISS
KOG1430 KOG C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases JGI ISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF20Panther NODULATION PROTEIN NOLK-RELATED JGI ISS
PF01073PFAM 3-beta hydroxysteroid dehydrogenase/isomerase family JGI ISS
UniRef100_G7J951UniRef Annotation by Michelle Graham. Most informative UniRef hit: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform n=1 Tax=Medicago truncatula RepID=G7J951_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K8I6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K8I6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g06080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g06080 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g058200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g06080
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g06080
>Glyma06g06080.1   sequence type=CDS   gene model=Glyma06g06080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCAAAAGATAAGTGGTGCGTGGTGACCGGAGGTCGCGGCTTCGCTGCTCGGTCTTTGGTGGAAATGCTAATTCGTCACAAGGAGTACTGCGTTCGCATCGCCGATTTGGAAGTCAGCATTGTTCTCGAGCCCGCCGAGCAGTTAGGCCTTCTCGGCCAGGCCCTGCACTCTGGCCGAGCCCAATATGTCTCCCTCGATCTTCGCAACAAGGCCCAAGTTCTAAAAGCGTTGGAGGGAGTTGAGGTGGTGTTCCACATGGCTGCTCCAAACTCTTCCATTAACAACTACCAGCTTCATCATTCCGTCAATGTGCAAGGGACGAATAATGTCATCGATGCTTGCGTGGAGCTGAACGTGAAGCGTCTCGTTTACACTAGCTGTCTCGTTTACACCAGCTCTCCCAGCGTCTTCTTCGACGATGTTCATGGAATTCATAATGGAAACGAAACAATGCCTTATGCGCATTCGCCTAATGATCATTATTCAGCAACGAAAGCCGAGGCTGAGGCATTGGTTATTAAAGCTAATGGGACTAATGGGCTCCTAACGTGCTGCATACGCCCTAGCAGCATTTTTGGGCCTGGTGATAGGCTGTCGGTGCCTTCACTAGTTGATGCTGCCAGAAAAGGGGAATCTAAGTTTCTTATTGGTGATGGCAATAACGTTTATGATTTCACATATGTTGAAAATGTGGCTCATGCCCATATATGTGCTGATCGAGCTCTAGCTTCAGAAGGACCGGTTTCAGAAAAAGCTGCGGGAGAGGCATATTTCATAACAAATATGGAGCCTATGAAATTCTGGGAGTTCGTGTCATTGGTAGTGGAAGGTCTTGGATATGAAAGGCCAAGGATAAAGATCCCCACCTTTGTTATCATGCCCATTGCACATTTGGTGGAGTGGATATATAAGCTGCTAGGCCCATATGGGATGAAGCTGCCTCAGTTAATTCCTTCGAGAATAAGACTCATATCTTGCAGCAGAACTTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTATGCACCCATCGTAACACTACAGGAGGGTCTGCGAAGGACAATTGAATCATACACACACTTGAAGGCGGATAATGAACCTAAAACTAAAAGAGAAGGTCCCTCAAAAGCTTCCAAATATCTTGGAAGTGGAAGAGGTGTGAATAATCAACTATATCTGTCTAACTTCTTTGCTTGGTGA
Predicted protein sequences of Glyma06g06080
>Glyma06g06080.1   sequence type=predicted peptide   gene model=Glyma06g06080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAKDKWCVVTGGRGFAARSLVEMLIRHKEYCVRIADLEVSIVLEPAEQLGLLGQALHSGRAQYVSLDLRNKAQVLKALEGVEVVFHMAAPNSSINNYQLHHSVNVQGTNNVIDACVELNVKRLVYTSCLVYTSSPSVFFDDVHGIHNGNETMPYAHSPNDHYSATKAEAEALVIKANGTNGLLTCCIRPSSIFGPGDRLSVPSLVDAARKGESKFLIGDGNNVYDFTYVENVAHAHICADRALASEGPVSEKAAGEAYFITNMEPMKFWEFVSLVVEGLGYERPRIKIPTFVIMPIAHLVEWIYKLLGPYGMKLPQLIPSRIRLISCSRTFDCSKAKDRLGYAPIVTLQEGLRRTIESYTHLKADNEPKTKREGPSKASKYLGSGRGVNNQLYLSNFFAW*






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