Glyma06g06070 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g06070

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4331965
stop:	4337928
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43930	AT	Annotation by Michelle Graham. TAIR10: BRCT domain-containing DNA repair protein \| chr3:15760948-15763263 REVERSE LENGTH=502	SoyBase	E_val: 4.00E-166	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR13561	Panther	DNA REPLICATION REGULATOR DPB11-RELATED	JGI		ISS
PTHR13561:SF20	Panther		JGI		ISS
PF00533	PFAM	BRCA1 C Terminus (BRCT) domain	JGI		ISS
UniRef100_G7J947	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA topoisomerase 2-binding protein n=1 Tax=Medicago truncatula RepID=G7J947_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K8I4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8I4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06070

Paralog	Evidence	Comments
Glyma04g06071	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g058100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06070

Limit To All Plant Sequences

>Glyma06g06070.1   sequence type=CDS   gene model=Glyma06g06070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCAATTCCTTCATTCAGAGGTTTGCAACCATTGGAGCCAATGTCTCCTGCTTCGTCTCCTTTGCAAGTGCCATCATCAACTGCTCCTTTTGCTGGTCTTGTCATATGCGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGACAGTATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGCCTCTTTGTTGTTACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAACTGTGAGGTTGAGTGAATCACATTATAGAGTGAAGAGTTACGGGGATAACAACACACGTTTGGAGGATTTTAGACTGCTTCCTGAGTATAGAAATGCTGAAAATTCTTGTTTTCCTGCAAGAATCCACCAAAGCAACCAAGCTAATAGTGTTGAAGAACTTCAAAGATTCACTGGAAGAGAGTCTAACAGAAATTCGGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAGGCATTTCATCTGAATTGCGAAACAAGGTTATTGAGACTGCTTCAAGAGAAGGTGCTAGTTTGGTTGAACAATGGTTTGTTGGCTGCAGTGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAGTAACCTCATTACACCTCTGTGGATTCTCAAAACAGCTAAGGAGAAATATGTGCGAAAGCTTGTTCACATGTCCGTTGATTTGGCAAAGCAAGTTGGCCTAATGCTTGAAGACATCCATAATGACATTTCAGGAAAGGAAGTAATAAAGCAAAAAGTCCTTAACAATCTTCCGGATACTGAAAGTGAAGTCAGCTATGAAGAAAGACAACAAATTGTGAATTCTGCCAAAAATGGAGTCAGAAATCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATTCGTCCTATAACACCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCCGAGCCAACTTCAACTGCTTCCATTTACACAGACTCTTTCAGTGTTGAAGATCCTAGTGAAAATCATACTTCAATATTTTTTGACGCAAAAGGGGATGGCAAGGATTCGGAAGCTTCGTTTTCAAACTCCACTCGTCCTCTGACAGAAAGCGAGAAATCCGAGTTGATATTTAAAAACCATTTCCTTACCATACTATTACCAATCGACCGATTTGCTGAGATGGGTCCTTCTTCAAGAACGTTTTTCAGCCATAATGGTTTTACATGTCTTCAGGTGTTGGATCATATCCGTGCATTTTATCAGGAGAACATGTCAAGGCAAGAAATAGAAGCTGCAATTCATAGTGATTCAAGACACGCTGATAGGCTTAGATCAGTGTACTCAAGTAAGGAAACAGCTGAAAGTGGCTATGTAATGTTCAAAAGGGTTGAATTCTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAGCGTGTAACTGGGGACAACAATTCCAACGTTTATGAGCTATTACTTAGGGCCTAA

Predicted protein sequences of Glyma06g06070

Limit To All Plant Sequences

>Glyma06g06070.1   sequence type=predicted peptide   gene model=Glyma06g06070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGDGRVEVVSGKGCSRLFSSSIPSFRGLQPLEPMSPASSPLQVPSSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKTVRLSESHYRVKSYGDNNTRLEDFRLLPEYRNAENSCFPARIHQSNQANSVEELQRFTGRESNRNSDSTLSGCSIYVDPGISSELRNKVIETASREGASLVEQWFVGCSVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKYVRKLVHMSVDLAKQVGLMLEDIHNDISGKEVIKQKVLNNLPDTESEVSYEERQQIVNSAKNGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISEPTSTASIYTDSFSVEDPSENHTSIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILLPIDRFAEMGPSSRTFFSHNGFTCLQVLDHIRAFYQENMSRQEIEAAIHSDSRHADRLRSVYSSKETAESGYVMFKRVEFLGSRTSFEMLKRVTGDNNSNVYELLLRA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain