Glyma06g06030 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g06030

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4309053
stop:	4315526
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g06030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26280	AT	Annotation by Michelle Graham. TAIR10: CTC-interacting domain 7 \| chr2:11188143-11190579 REVERSE LENGTH=567	SoyBase	E_val: 0	ISS
GO:0006298	GO-bp	Annotation by Michelle Graham. GO Biological Process: mismatch repair	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003684	GO-mf	Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PF01713	PFAM	Smr domain	JGI		ISS
PF08590	PFAM	Domain of unknown function (DUF1771)	JGI		ISS
UniRef100_B9RQZ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RQZ0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K8I2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8I2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g06030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g06030

Paralog	Evidence	Comments
Glyma04g06010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g06030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g057700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g06030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g06030

Limit To All Plant Sequences

>Glyma06g06030.3   sequence type=CDS   gene model=Glyma06g06030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTTAACCAAGAAAGGACCCCTAACGGATGCAAAGCTATTAAGCCCAAACAAGGCAACTACTCTGAATCCAAATGCAGCAGAGTTTGTTCCTTTTGCCCTCAGATCATCATCATTATCTGGAACTACCAGCTTGGTAGATGCAACAGCAAGGCTTACTGCTGCTGGAACTCTTGGGAAAGCAGTTTTAGATAGATCAGAATCATCCATTTCAAATAATTCTGATGATGAGGTGCACCGATACTGGCGATGTCAGCTCCCGGATGATATTACCCCTGATTTCAAGGTCTTGGGAGAAGATGAGTCTCGAGTTCTTGATGATATTTCTTTAGCAGGTTTATCTATACATGATGACAATGAAGCCTCCAGGTTTCCTTCTTCTAAAGGAAGTAAATATATAATAAATGAGCAGGAGGAAATATCTCAACAGCATGCTAATGGCAATAGCTTGGCAGATAAATTAGGGTTTTCCAATTCAAGCTACAGGGAGGACCCATCTTCTGGAAGCTTTTTGAATGCTCTGGCAAAGCCTTGGGAGAGGCCAATTGGGAGTGCTGACCAGCGTATTAACAGTGGTCAAGAGGGCCTTACTTATGATGACAACTCTAGACATGGATACTTAAATGATATTTTGGCCGAAAATGCAATTGTGGATGATACTGATCTGAATCCTTTGGAGTTTTTAGCCTCCCTGTTCCCTGGTTTTGCAGCAGAAAGCCTTGCAGAAGCTTACTTTGCTAATAGATGTGATTTACATCTGACCACTGAGATGCTCAATCAGTTAGAGCTTCAAGTTGATGGTGGTTTCAATCAGAATCTGAATTCAAAGACTTTGTCTGCTCCCAATCTCAGTGCAATGGACTACCCTGCACTTACTTCACCAGATGGCCAGACTGCTTCAGTAGAATATGTGGTTGATAATGTGCAACAAAGTGGCAATCCTTACCGATCATATGACAGTGATGTGCTGCTTTTCAAATCTGTCTCTTCAGTTTCATCTAGGGGTGGTGCTATTGACTTTGCTTCAGCTGTTAGGAAGTTGGCTTCTCGGGATTCTGGTGGTATTTGGAAGTATGATAAAAATGGCTCTGGTGATGCTGCTATCGGCTCAAGTAGGAATTCGAATGTTCTGGCTAGTGGTTACAATGGTGGACAGGGGAGAGCACACTTTGGTGATCGGTTACAGAACCGTGGTTCAGCTCGGGCATTTCCTGTTTGGCTTGAAACTGGTGATGCAGTTGCAAATATGTATTCAGAGTTGCGGGAAGAGGCTCGTGATCATGCATGCTTACGTAATGCATATTTTGAGCAGGCACAGCAAGCCTATCTTATTGGTAATAAAGCCCTAGCAAAGGAACTAAGTGCTAAAGGGCAACTGCACAACATGCATATGAAGGTTGCTCATGGAAAAGCTCAAGAATCCATTTACCTCCAGAGAAATCCAGTTGCTCCAGAGTTGCAGGGCGATGGAAGAGGAAATGAGAGGATAATAGACCTACACGGGTTGCACGCAAGTGAAGCCATTCATGTGCTGAAACATGAGTTGAGTGTGCTGAAAAGCACTGCCATAGCTGCCGAGCAGCGTCTGCAGGTTTATATTCTTGTGGGCACAGGTCATCATACCAGGGGTTCTCGCACTCCTGCAAGACTTCCAATAGCTGTACAGCGTTTTCTTCTTGAAGAGGGCATTGACTTCACGGAAACTCAGCCAGGCCTACTTCGTGTTGTGATATATTGA

Predicted protein sequences of Glyma06g06030

Limit To All Plant Sequences

>Glyma06g06030.3   sequence type=predicted peptide   gene model=Glyma06g06030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLTKKGPLTDAKLLSPNKATTLNPNAAEFVPFALRSSSLSGTTSLVDATARLTAAGTLGKAVLDRSESSISNNSDDEVHRYWRCQLPDDITPDFKVLGEDESRVLDDISLAGLSIHDDNEASRFPSSKGSKYIINEQEEISQQHANGNSLADKLGFSNSSYREDPSSGSFLNALAKPWERPIGSADQRINSGQEGLTYDDNSRHGYLNDILAENAIVDDTDLNPLEFLASLFPGFAAESLAEAYFANRCDLHLTTEMLNQLELQVDGGFNQNLNSKTLSAPNLSAMDYPALTSPDGQTASVEYVVDNVQQSGNPYRSYDSDVLLFKSVSSVSSRGGAIDFASAVRKLASRDSGGIWKYDKNGSGDAAIGSSRNSNVLASGYNGGQGRAHFGDRLQNRGSARAFPVWLETGDAVANMYSELREEARDHACLRNAYFEQAQQAYLIGNKALAKELSAKGQLHNMHMKVAHGKAQESIYLQRNPVAPELQGDGRGNERIIDLHGLHASEAIHVLKHELSVLKSTAIAAEQRLQVYILVGTGHHTRGSRTPARLPIAVQRFLLEEGIDFTETQPGLLRVVIY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain