SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G21950 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:7254067-7255866 REVERSE LENGTH=308 | SoyBase | E_val: 5.00E-109 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1454 | KOG | Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) | JGI | ISS | |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE RELATED | JGI | ISS | |
| PTHR10992:SF163 | Panther | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN | JGI | ISS | |
| PF00561 | PFAM | alpha/beta hydrolase fold | JGI | ISS | |
| UniRef100_G7J939 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Epoxide hydrolase n=1 Tax=Medicago truncatula RepID=G7J939_MEDTR | SoyBase | E_val: 3.00E-152 | ISS |
| UniRef100_UPI0002339E97 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339E97 related cluster n=1 Tax=unknown RepID=UPI0002339E97 | SoyBase | E_val: 0 | ISS |
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Glyma06g05970 not represented in the dataset |
Glyma06g05970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g057100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g05970.2 sequence type=CDS gene model=Glyma06g05970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTTCGTCGTCATTTAGCTTCGTGTCGTTGTACAGCAAGTACATCCGACGATGTTTTACGAGCGCTGGGCTCTGGTCGCAGGCCCTGAGCGTGGACAAGGACGGCGAAACCACGATGCACTTTTGGGGCCCGAGAAAAGTCGAAGCGGCCCAGAAGCCCTCCCTGGTTCTGATCCACGGGTTTGGGCCCGCGGCCATGTGGCAATGGCGTCGCCAGGTGAAGTTCCTGGCCCCACACTTCAACCTATACGTCCCCGACCTCGTATTCTTCGGAGGGTCGCACACGAAGTCGGGGGAAAGAAGCGAAATGTTTCAGGCAGCGTCGGTGGGTAAACTTTTGGACAAATTGGAGGTAGAAAAGTTCCACGTGGTGGGGACCAGCTATGGGGGCATGGTGGCTTATAATTTGGCTAAGATGTTGGGCCAAGAGAGGGTGCAAAAAGTAGTTATTGCTAGCTCCGGTGTGAATATGACGATGAGTAGCAACACGGCGTTGGTGCAAAGTTCTGAAATGGAGAGCATCGATGACCTCATGTTGCCTACCAAGCCCCACCAATTGCGAAAATTGATGTCTCTTTCCATCTACAACCCTCCCCCGCTAGTGCCCGATTTTATGCTCAAAGCCTTCATAGACGAATTATACGGAGAAAATAAGAAGGAAAAATTGGAGCTTCTAAAAGGGATAACCATCGGAAGGAATGATACTTCAAATGTTTCACCTCTTCAACAGGAGGTTCTCATAGTCTGGGGGGAACAAGACCAGATATTTCCCGTGCAATTGGCCCATGAACTGAAAGAGGTAATAAGTAAGAATGCAAGATTGGAATTGATAAAGGAAACATCCCATGTGCCTCAAATGGAAAAGCCAGGAGAATTCAACAATATTATCCTAAATTTCTTACAAGGGAGTTCTTGA
>Glyma06g05970.2 sequence type=predicted peptide gene model=Glyma06g05970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSSSFSFVSLYSKYIRRCFTSAGLWSQALSVDKDGETTMHFWGPRKVEAAQKPSLVLIHGFGPAAMWQWRRQVKFLAPHFNLYVPDLVFFGGSHTKSGERSEMFQAASVGKLLDKLEVEKFHVVGTSYGGMVAYNLAKMLGQERVQKVVIASSGVNMTMSSNTALVQSSEMESIDDLMLPTKPHQLRKLMSLSIYNPPPLVPDFMLKAFIDELYGENKKEKLELLKGITIGRNDTSNVSPLQQEVLIVWGEQDQIFPVQLAHELKEVISKNARLELIKETSHVPQMEKPGEFNNIILNFLQGSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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