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Report for Sequence Feature Glyma06g05970

Feature Type:gene_model
Chromosome:Gm06
Start:4283661
stop:4286228
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g05970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G21950AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr5:7254067-7255866 REVERSE LENGTH=308 SoyBaseE_val: 5.00E-109ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG1454 KOG Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) JGI ISS
PTHR10992Panther ALPHA/BETA HYDROLASE RELATED JGI ISS
PTHR10992:SF163Panther HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN JGI ISS
PF00561PFAM alpha/beta hydrolase fold JGI ISS
UniRef100_G7J939UniRef Annotation by Michelle Graham. Most informative UniRef hit: Epoxide hydrolase n=1 Tax=Medicago truncatula RepID=G7J939_MEDTR SoyBaseE_val: 3.00E-152ISS
UniRef100_UPI0002339E97UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339E97 related cluster n=1 Tax=unknown RepID=UPI0002339E97 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g05970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g05970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g057100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g05970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g05970
>Glyma06g05970.2   sequence type=CDS   gene model=Glyma06g05970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTCGTCGTCATTTAGCTTCGTGTCGTTGTACAGCAAGTACATCCGACGATGTTTTACGAGCGCTGGGCTCTGGTCGCAGGCCCTGAGCGTGGACAAGGACGGCGAAACCACGATGCACTTTTGGGGCCCGAGAAAAGTCGAAGCGGCCCAGAAGCCCTCCCTGGTTCTGATCCACGGGTTTGGGCCCGCGGCCATGTGGCAATGGCGTCGCCAGGTGAAGTTCCTGGCCCCACACTTCAACCTATACGTCCCCGACCTCGTATTCTTCGGAGGGTCGCACACGAAGTCGGGGGAAAGAAGCGAAATGTTTCAGGCAGCGTCGGTGGGTAAACTTTTGGACAAATTGGAGGTAGAAAAGTTCCACGTGGTGGGGACCAGCTATGGGGGCATGGTGGCTTATAATTTGGCTAAGATGTTGGGCCAAGAGAGGGTGCAAAAAGTAGTTATTGCTAGCTCCGGTGTGAATATGACGATGAGTAGCAACACGGCGTTGGTGCAAAGTTCTGAAATGGAGAGCATCGATGACCTCATGTTGCCTACCAAGCCCCACCAATTGCGAAAATTGATGTCTCTTTCCATCTACAACCCTCCCCCGCTAGTGCCCGATTTTATGCTCAAAGCCTTCATAGACGAATTATACGGAGAAAATAAGAAGGAAAAATTGGAGCTTCTAAAAGGGATAACCATCGGAAGGAATGATACTTCAAATGTTTCACCTCTTCAACAGGAGGTTCTCATAGTCTGGGGGGAACAAGACCAGATATTTCCCGTGCAATTGGCCCATGAACTGAAAGAGGTAATAAGTAAGAATGCAAGATTGGAATTGATAAAGGAAACATCCCATGTGCCTCAAATGGAAAAGCCAGGAGAATTCAACAATATTATCCTAAATTTCTTACAAGGGAGTTCTTGA
Predicted protein sequences of Glyma06g05970
>Glyma06g05970.2   sequence type=predicted peptide   gene model=Glyma06g05970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSSSFSFVSLYSKYIRRCFTSAGLWSQALSVDKDGETTMHFWGPRKVEAAQKPSLVLIHGFGPAAMWQWRRQVKFLAPHFNLYVPDLVFFGGSHTKSGERSEMFQAASVGKLLDKLEVEKFHVVGTSYGGMVAYNLAKMLGQERVQKVVIASSGVNMTMSSNTALVQSSEMESIDDLMLPTKPHQLRKLMSLSIYNPPPLVPDFMLKAFIDELYGENKKEKLELLKGITIGRNDTSNVSPLQQEVLIVWGEQDQIFPVQLAHELKEVISKNARLELIKETSHVPQMEKPGEFNNIILNFLQGSS*






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