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Report for Sequence Feature Glyma06g05960

Feature Type:gene_model
Chromosome:Gm06
Start:4272487
stop:4278666
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g05960
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26300AT Annotation by Michelle Graham. TAIR10: G protein alpha subunit 1 | chr2:11198087-11200822 FORWARD LENGTH=383 SoyBaseE_val: 0ISS
GO:0000303GO-bp Annotation by Michelle Graham. GO Biological Process: response to superoxide SoyBaseN/AISS
GO:0006396GO-bp Annotation by Michelle Graham. GO Biological Process: RNA processing SoyBaseN/AISS
GO:0006471GO-bp Annotation by Michelle Graham. GO Biological Process: protein ADP-ribosylation SoyBaseN/AISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006571GO-bp Annotation by Michelle Graham. GO Biological Process: tyrosine biosynthetic process SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007186GO-bp Annotation by Michelle Graham. GO Biological Process: G-protein coupled receptor signaling pathway SoyBaseN/AISS
GO:0007188GO-bp Annotation by Michelle Graham. GO Biological Process: adenylate cyclase-modulating G-protein coupled receptor signaling pathway SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009094GO-bp Annotation by Michelle Graham. GO Biological Process: L-phenylalanine biosynthetic process SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009755GO-bp Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway SoyBaseN/AISS
GO:0009785GO-bp Annotation by Michelle Graham. GO Biological Process: blue light signaling pathway SoyBaseN/AISS
GO:0009788GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009789GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010119GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement SoyBaseN/AISS
GO:0010244GO-bp Annotation by Michelle Graham. GO Biological Process: response to low fluence blue light stimulus by blue low-fluence system SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0042127GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation SoyBaseN/AISS
GO:0071215GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus SoyBaseN/AISS
GO:0072593GO-bp Annotation by Michelle Graham. GO Biological Process: reactive oxygen species metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005789GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane SoyBaseN/AISS
GO:0005834GO-cc Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0031234GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to internal side of plasma membrane SoyBaseN/AISS
GO:0001664GO-mf Annotation by Michelle Graham. GO Molecular Function: G-protein coupled receptor binding SoyBaseN/AISS
GO:0003924GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activity SoyBaseN/AISS
GO:0004871GO-mf Annotation by Michelle Graham. GO Molecular Function: signal transducer activity SoyBaseN/AISS
GO:0005095GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase inhibitor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005525GO-mf Annotation by Michelle Graham. GO Molecular Function: GTP binding SoyBaseN/AISS
GO:0016247GO-mf Annotation by Michelle Graham. GO Molecular Function: channel regulator activity SoyBaseN/AISS
GO:0019001GO-mf Annotation by Michelle Graham. GO Molecular Function: guanyl nucleotide binding SoyBaseN/AISS
GO:0031683GO-mf Annotation by Michelle Graham. GO Molecular Function: G-protein beta/gamma-subunit complex binding SoyBaseN/AISS
GO:0051020GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase binding SoyBaseN/AISS
KOG0082 KOG G-protein alpha subunit (small G protein superfamily) JGI ISS
PTHR10218Panther GTP-BINDING PROTEIN ALPHA SUBUNIT JGI ISS
PTHR10218:SF25Panther gb def: guanine nucleotide-binding protein, alpha subunit [caenorhabditis elegans] JGI ISS
PF00503PFAM G-protein alpha subunit JGI ISS
UniRef100_Q0KKS2UniRef Annotation by Michelle Graham. Most informative UniRef hit: G protein alpha subunit n=1 Tax=Phaseolus lunatus RepID=Q0KKS2_PHALU SoyBaseE_val: 0ISS
UniRef100_UPI000233A5B9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A5B9 related cluster n=1 Tax=unknown RepID=UPI000233A5B9 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g05960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g05960 not represented in the dataset
Glyma06g05960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05960
ParalogEvidenceComments
Glyma04g05960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05960 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g057000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g05960
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g05960
>Glyma06g05960.2   sequence type=transcript   gene model=Glyma06g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACAATATAGTGGTGCTTGGTCTGCGTTAAGATGTTGGAGTTGAAAGTGGCAGGCGGAGAGAGAAAGAGGGGTCAGTGAGTGTATTTTCCCAAGAAGACATAAAAAAAGTGCCATTGCTGTGCCTTTTGTTGCTGTTGCTGTTGCTGCTGCCTTCTTGTGTCCTTTCTAAACTCAACTTTGACCCGACCAAAGGGTGCAGGAACAACCAACCAAGAACCCTCCCTCACAGCTTTCGGCGCTCTTAATTCATTCATTAATTTCTTTCTCTATTTTAATTTTAATTAATTAATTTCATCATATATTCATTCGTTCATAATCATATATGTCTATGTTATATGTACACTTACGGCATTGGTCACACTCCTCTGATCTGAATCCCTTTATGTTATAACATTATTATTATTATTACCTTAAACTAAACAACAATTATTATTGTTATGTTACTGTACAAGTACTTGAGTACTACATTGTATAGAACTTGGAATACTATATACTACATCTTCCTCCATGGAGAAGAACACAAACTGAACTTGTTGCTTTCTAGTTTCGCTTCACACTTCACACTTAACGTATCCGCCAAATCTAGGGGCATATTCCATTCCACCACCATTTCTCTGCAAAAGAGACCCTTTTGCTTCTTTTCAGATAACATGGGCTTAGTCTGCAGCAGAGGTCGTCGTTTTCGTGAAGCTGATGCTGAAGAAAATGCTCAGGATGCAGAAATTGAAAGAAGAATCAAGTTAGAAACAAAGGCTGAAAAGCATATTCAGAAACTTTTATTACTAGGTGCTGGAGAGTCTGGGAAGTCTACAATCTTTAAGCAGATAAAACTTTTGTTTCAAACTGGCTTTGACGAGGCTGAGCTAAAAAGCTACATACCAGTCATTCATGCTAATGTGTATCAGGCAATAAAAGTACTGCATGATGGGTCAAAAGAGTTGGCGCAGAATGATGTTGATTCTTCAAAGTATGTAATATCTCATGAAAACCAGAACATTGGTGAAAAGCTCTCAGAAATTGGAGCCAGGCTGGATTATCCTTGTTTTACCAAAGAGCTTGCACAGGAAATAGAGAGACTGTGGGAGGATGCTGCAATTCAGGAAACATGTGCCCGTGGTAATGAACTCCAAGTTCCAGATTGTGCCCATTATTTCATGGAAAATTTGGAGAGGCTGTCTGATGCAAACTATGTTCCAACAAAGGAGGATGTTTTGTATGCAAGAGTTCGTACAACTGGTGTTGTTGAGATCCAGTTCAGCCCTGTTGGAGAAAATAAGAGAAGTGGTGAAGTCTATAGACTCTTTGATGTTGGTGGTCAGAGAAATGAGAGGAGAAAATGGATCCATCTTTTTGAAGGAGTTACAGCTGTAATATTCTGTGCTGCAATTAGCGGGTATGATCAGACACTTTATGAGGATGAAAACAAGAACAGAATGATGGAGACTAAGGAACTTTTCGAGTGGGTCCTGAAGCAACCATGTTTTGAGAAAACATCCTTCATGTTATTTTTAAACAAGTTTGACATATTTGAAAAGAAGATCCTGAATGTTCCGCTCAATGTATGTGAGTGGTTCAAAGATTACCAGCCAGTTTCAACAGGGAAACAAGAGATCGAACATGCGTACGAGTTTGTGAAGAAAAAGTTTGAGGAATTGTATTTCCAGAGCACTGCTCCTGACCGTGTAGATCGCGTGTTCAAGATCTATCGGACGACTGCCCTTGATCAGAAGCTTGTGAAGAAGACTTTCAAGCTTGTTGATGAGACTTTGAGACGGAGGAATCTCTTTGAAGCTGGCTTATTATGACCTTGCTTGCAACAGTATGTATGCTTAAGAGGGATGACATTTTTACATTGAGAAATTAAAAGGTCATCTGATTTTGTTGGGTATACTAGAGGTCAGGTATACAACAATATAAAATCGATTTGTTGATTTTATGCCAAGTAAATCCTGGGTGGATAGGGAAAGCCTTTCTGAATACTTGATCATCACATCCATCTTTAGAAGGAAAATTAGTTGCGCTCAAATTTTCAGAGATGACATTATGCTTTGTGATTATCTTTTTCATTGATTGAAAGTCACTAATGATATATTTCATATCCTTTATTTATGTCTATTAAATGTTGATGAGGTTTTGCCCTTGGTTCAGCATGTAAGTTAATTTGAGGTTTTTTTG
Coding sequences of Glyma06g05960
>Glyma06g05960.1   sequence type=CDS   gene model=Glyma06g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTACTGTACAAGTACTTGAGTACTACATTGTATAGAACTTGGAATACTATATACTACATCTTCCTCCATGGAGAAGAACACAAACTGAACTTGTTGCTTTCTAGTTTCGCTTCACACTTCACACTTAACGTATCCGCCAAATCTAGGGGCATATTCCATTCCACCACCATTTCTCTGCAAAAGAGACCCTTTTGCTTCTTTTCAGATAACATGGGCTTAGTCTGCAGCAGAGGTCGTCGTTTTCGTGAAGCTGATGCTGAAGAAAATGCTCAGGATGCAGAAATTGAAAGAAGAATCAAGTTAGAAACAAAGGCTGAAAAGCATATTCAGAAACTTTTATTACTAGGTGCTGGAGAGTCTGGGAAGTCTACAATCTTTAAGCAGATAAAACTTTTGTTTCAAACTGGCTTTGACGAGGCTGAGCTAAAAAGCTACATACCAGTCATTCATGCTAATGTGTATCAGGCAATAAAAGTACTGCATGATGGGTCAAAAGAGTTGGCGCAGAATGATGTTGATTCTTCAAAGTATGTAATATCTCATGAAAACCAGAACATTGGTGAAAAGCTCTCAGAAATTGGAGCCAGGCTGGATTATCCTTGTTTTACCAAAGAGCTTGCACAGGAAATAGAGAGACTGTGGGAGGATGCTGCAATTCAGGAAACATGTGCCCGTGGTAATGAACTCCAAGTTCCAGATTGTGCCCATTATTTCATGGAAAATTTGGAGAGGCTGTCTGATGCAAACTATGTTCCAACAAAGGAGGATGTTTTGTATGCAAGAGTTCGTACAACTGGTGTTGTTGAGATCCAGTTCAGCCCTGTTGGAGAAAATAAGAGAAGTGGTGAAGTCTATAGACTCTTTGATGTTGGTGGTCAGAGAAATGAGAGGAGAAAATGGATCCATCTTTTTGAAGGAGTTACAGCTGTAATATTCTGTGCTGCAATTAGCGGGTATGATCAGACACTTTATGAGGATGAAAACAAGAACAGAATGATGGAGACTAAGGAACTTTTCGAGTGGGTCCTGAAGCAACCATGTTTTGAGAAAACATCCTTCATGTTATTTTTAAACAAGTTTGACATATTTGAAAAGAAGATCCTGAATGTAAGAACCATCCAGATGAGTACACTTTGTCATAGGTGGAGTCTATTATCATTTCAGTTTAATACCTTGCGTTGTGCAGGTTCCGCTCAATGTATGTGA

>Glyma06g05960.2   sequence type=CDS   gene model=Glyma06g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTACTGTACAAGTACTTGAGTACTACATTGTATAGAACTTGGAATACTATATACTACATCTTCCTCCATGGAGAAGAACACAAACTGAACTTGTTGCTTTCTAGTTTCGCTTCACACTTCACACTTAACGTATCCGCCAAATCTAGGGGCATATTCCATTCCACCACCATTTCTCTGCAAAAGAGACCCTTTTGCTTCTTTTCAGATAACATGGGCTTAGTCTGCAGCAGAGGTCGTCGTTTTCGTGAAGCTGATGCTGAAGAAAATGCTCAGGATGCAGAAATTGAAAGAAGAATCAAGTTAGAAACAAAGGCTGAAAAGCATATTCAGAAACTTTTATTACTAGGTGCTGGAGAGTCTGGGAAGTCTACAATCTTTAAGCAGATAAAACTTTTGTTTCAAACTGGCTTTGACGAGGCTGAGCTAAAAAGCTACATACCAGTCATTCATGCTAATGTGTATCAGGCAATAAAAGTACTGCATGATGGGTCAAAAGAGTTGGCGCAGAATGATGTTGATTCTTCAAAGTATGTAATATCTCATGAAAACCAGAACATTGGTGAAAAGCTCTCAGAAATTGGAGCCAGGCTGGATTATCCTTGTTTTACCAAAGAGCTTGCACAGGAAATAGAGAGACTGTGGGAGGATGCTGCAATTCAGGAAACATGTGCCCGTGGTAATGAACTCCAAGTTCCAGATTGTGCCCATTATTTCATGGAAAATTTGGAGAGGCTGTCTGATGCAAACTATGTTCCAACAAAGGAGGATGTTTTGTATGCAAGAGTTCGTACAACTGGTGTTGTTGAGATCCAGTTCAGCCCTGTTGGAGAAAATAAGAGAAGTGGTGAAGTCTATAGACTCTTTGATGTTGGTGGTCAGAGAAATGAGAGGAGAAAATGGATCCATCTTTTTGAAGGAGTTACAGCTGTAATATTCTGTGCTGCAATTAGCGGGTATGATCAGACACTTTATGAGGATGAAAACAAGAACAGAATGATGGAGACTAAGGAACTTTTCGAGTGGGTCCTGAAGCAACCATGTTTTGAGAAAACATCCTTCATGTTATTTTTAAACAAGTTTGACATATTTGAAAAGAAGATCCTGAATGTTCCGCTCAATGTATGTGAGTGGTTCAAAGATTACCAGCCAGTTTCAACAGGGAAACAAGAGATCGAACATGCGTACGAGTTTGTGAAGAAAAAGTTTGAGGAATTGTATTTCCAGAGCACTGCTCCTGACCGTGTAGATCGCGTGTTCAAGATCTATCGGACGACTGCCCTTGATCAGAAGCTTGTGAAGAAGACTTTCAAGCTTGTTGATGAGACTTTGAGACGGAGGAATCTCTTTGAAGCTGGCTTATTATGA
Predicted protein sequences of Glyma06g05960
>Glyma06g05960.1   sequence type=predicted peptide   gene model=Glyma06g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLYKYLSTTLYRTWNTIYYIFLHGEEHKLNLLLSSFASHFTLNVSAKSRGIFHSTTISLQKRPFCFFSDNMGLVCSRGRRFREADAEENAQDAEIERRIKLETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYIPVIHANVYQAIKVLHDGSKELAQNDVDSSKYVISHENQNIGEKLSEIGARLDYPCFTKELAQEIERLWEDAAIQETCARGNELQVPDCAHYFMENLERLSDANYVPTKEDVLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISGYDQTLYEDENKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILNVRTIQMSTLCHRWSLLSFQFNTLRCAGSAQCM*

>Glyma06g05960.2   sequence type=predicted peptide   gene model=Glyma06g05960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLYKYLSTTLYRTWNTIYYIFLHGEEHKLNLLLSSFASHFTLNVSAKSRGIFHSTTISLQKRPFCFFSDNMGLVCSRGRRFREADAEENAQDAEIERRIKLETKAEKHIQKLLLLGAGESGKSTIFKQIKLLFQTGFDEAELKSYIPVIHANVYQAIKVLHDGSKELAQNDVDSSKYVISHENQNIGEKLSEIGARLDYPCFTKELAQEIERLWEDAAIQETCARGNELQVPDCAHYFMENLERLSDANYVPTKEDVLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISGYDQTLYEDENKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILNVPLNVCEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQSTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLFEAGLL*






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