SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G21930 | AT | Annotation by Michelle Graham. TAIR10: P-type ATPase of Arabidopsis 2 | chr5:7243129-7248721 FORWARD LENGTH=883 | SoyBase | E_val: 0 | ISS |
| GO:0006754 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process | SoyBase | N/A | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0006825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: copper ion transport | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport chain | SoyBase | N/A | ISS |
| GO:0030001 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metal ion transport | SoyBase | N/A | ISS |
| GO:0046034 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP metabolic process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005375 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0015662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | SoyBase | N/A | ISS |
| GO:0043682 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper-transporting ATPase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0207 | KOG | Cation transport ATPase | JGI | ISS | |
| PTHR24093 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24093:SF26 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00122 | PFAM | E1-E2 ATPase | JGI | ISS | |
| PF00403 | PFAM | Heavy-metal-associated domain | JGI | ISS | |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| UniRef100_A7ISW5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Copper P1B-ATPase n=1 Tax=Glycine max RepID=A7ISW5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K8G7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8G7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma06g05890 not represented in the dataset |
Glyma06g05890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g05897 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g056300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g05890.1 sequence type=CDS gene model=Glyma06g05890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACTCATCTTTTCAGACTTCCTCTCTTCTCGCAACCCAAGCTCTCCTTCAATCACACGCCTAATCATGCACTCCACTTCATTTCTCCTCTGCCGGCAAAACGACATCGCACCCGCAACCGCCACCGTCGTCGAATTCTCCGGCCACCGTTCTCTGTTTCGAACTCCTTCGGCACCGAGATTGGCTCGCCGGAATTTTCTCTCCTTCAAAGCAGGAGAGAGGCCAAAGACTCGCCGGTTCTGCTCGACGTCACCGGAATGATGTGCGGCGCGTGCGTCTCCCGAGTCAAAAACATCCTCTCCGCTGACGACCGAGTTGACTCGGTCGTGGTCAACATGTTGACCGAGACCGCCGCCGTCAAGCTGCGGCGGATCGAGGAGGAACCGGCGAGCGTCGCGGAGAGCCTCGCTCTGAGACTGAGCGATTGCGGATTTCCGACGAAGAGGAGGGCGTCGAGCTCGGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAGTTGGTGAAGAAGAAGGAGGAATTGGTCGTTAAGAGTCGAAGCCGCGTCGCGTTCGCTTGGACATTGGTCGCATTGTGCTGCGGATCGCACGCTTCGCATATTTTCCACTCCTTGGGGATTCACATTGCTCACGGACCGCTTATGGAGATTCTTCATAGTTCATACTTGAAAGGTGGTTTAGCTTTGGGGTCTCTATTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAACGCATTTAAGAAGGGGTCGCCTAATATGAACTCTCTCGTGGGATTTGGTTCTGTAGCTGCTTTCATCATTAGTTCGATCTCGCTACTTAACCCCGGCCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTGGGACGTTCTCTGGAGGAAAAGGCAAGGATTCAGGCATCTAGCGATATGAATGAACTGCTTTCACTGATATCCACTCAGTCAAGACTTGTGATTACTTCAACAGAAGGTTCACCTTCTACTGACACTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGGGATTCTGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAACGGTCATTTCAGGAAGAAGTGTTATAGATGAATCCATGCTTACAGGGGAATCACTTCCTGTATTTAAGGAGAAAGGGCTCACAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACTATGATATCGAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACATTTGCATTTTGGTATTTTGTAGGATCACACATATTTCCTGATGTTTTGCTCAACGATATTGCTGGCCCAGAAGGAGATCCTTTGTTGTTGAGTTTAAAACTATCCGTAGATGTTTTGGTTGTTTCTTGTCCATGTGCACTGGGTCTTGCTACGCCCACAGCAATCTTGGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCTGGAATAAATTATATTGCTCTAGACAAGACAGGAACCCTTACCAAAGGAAAACCAGTTGTGTCGGCCATAAGCTCTATCCTTTATGGAGAATCTGAAATTCTTCGGCTTGCTGCTGCAGTGGAGAAAACAGCATCTCACCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCATTAGAGTTGGTACTTCCCGTTACAAAGGGACAGTTGGTTGAGCCAGGTTTTGGAACTTTAGCAGAAGTTGATGGGCATCTGATTGCAGTTGGGTCTTTAGAATGGGTTCATGAACGCTTCCAGACAAGAGCGAACCCATCTGATTTGACAAATCTGGAGAATAGTTTGATGAATCATTCATTGAATACAACATCTTCAAAGTATTCAAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCGATTGCCATATCTGACACTGTGCGTGAAGATGCTGAATCTACTATAACAAGGCTCAAGCAGAAGGGGATTAAAACAGTCCTCTTGTCAGGAGACAGGGAAGAGGCAGTTGCAACTGTAGCAGATACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCACAACAGAAATCTGGATTTATTTCCTCTCTGAAAGCTGCTGGACATCATGTTGCAATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTGGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAAATTTGTGTTGGGCGGTCGCATATAATGTTGTTGCCATTCCCATTGCTGCTGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGATCTCTAGAAAGGTTGGGTCAACTATAGAAATCATATCTTCCCATTCGAACACAGATATGCTTAATTTAAAATAA
>Glyma06g05890.1 sequence type=predicted peptide gene model=Glyma06g05890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATHLFRLPLFSQPKLSFNHTPNHALHFISPLPAKRHRTRNRHRRRILRPPFSVSNSFGTEIGSPEFSLLQSRREAKDSPVLLDVTGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRRIEEEPASVAESLALRLSDCGFPTKRRASSSGVTENVRKWKELVKKKEELVVKSRSRVAFAWTLVALCCGSHASHIFHSLGIHIAHGPLMEILHSSYLKGGLALGSLLGPGRELLFDGLNAFKKGSPNMNSLVGFGSVAAFIISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEGSPSTDTVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDGTVISGRSVIDESMLTGESLPVFKEKGLTVSAGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFVGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGINYIALDKTGTLTKGKPVVSAISSILYGESEILRLAAAVEKTASHPIAKAIVNKAESLELVLPVTKGQLVEPGFGTLAEVDGHLIAVGSLEWVHERFQTRANPSDLTNLENSLMNHSLNTTSSKYSKTVVYVGREGEGIIGAIAISDTVREDAESTITRLKQKGIKTVLLSGDREEAVATVADTVGIENDFVKASLSPQQKSGFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMGKVYQNLCWAVAYNVVAIPIAAGVLLPHFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQISRKVGSTIEIISSHSNTDMLNLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
