Glyma06g05890 - SoyBase

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Report for Sequence Feature Glyma06g05890

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4207295
stop:	4216123
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G21930	AT	Annotation by Michelle Graham. TAIR10: P-type ATPase of Arabidopsis 2 \| chr5:7243129-7248721 FORWARD LENGTH=883	SoyBase	E_val: 0	ISS
GO:0006754	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process	SoyBase	N/A	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0006825	GO-bp	Annotation by Michelle Graham. GO Biological Process: copper ion transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009767	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport chain	SoyBase	N/A	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0046034	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0015662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	SoyBase	N/A	ISS
GO:0043682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper-transporting ATPase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG0207	KOG	Cation transport ATPase	JGI		ISS
PTHR24093	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24093:SF26	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00122	PFAM	E1-E2 ATPase	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_A7ISW5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Copper P1B-ATPase n=1 Tax=Glycine max RepID=A7ISW5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1K8G7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8G7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05890

Paralog	Evidence	Comments
Glyma04g05897	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g056300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05890

Limit To All Plant Sequences

>Glyma06g05890.1   sequence type=CDS   gene model=Glyma06g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTCATCTTTTCAGACTTCCTCTCTTCTCGCAACCCAAGCTCTCCTTCAATCACACGCCTAATCATGCACTCCACTTCATTTCTCCTCTGCCGGCAAAACGACATCGCACCCGCAACCGCCACCGTCGTCGAATTCTCCGGCCACCGTTCTCTGTTTCGAACTCCTTCGGCACCGAGATTGGCTCGCCGGAATTTTCTCTCCTTCAAAGCAGGAGAGAGGCCAAAGACTCGCCGGTTCTGCTCGACGTCACCGGAATGATGTGCGGCGCGTGCGTCTCCCGAGTCAAAAACATCCTCTCCGCTGACGACCGAGTTGACTCGGTCGTGGTCAACATGTTGACCGAGACCGCCGCCGTCAAGCTGCGGCGGATCGAGGAGGAACCGGCGAGCGTCGCGGAGAGCCTCGCTCTGAGACTGAGCGATTGCGGATTTCCGACGAAGAGGAGGGCGTCGAGCTCGGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAGTTGGTGAAGAAGAAGGAGGAATTGGTCGTTAAGAGTCGAAGCCGCGTCGCGTTCGCTTGGACATTGGTCGCATTGTGCTGCGGATCGCACGCTTCGCATATTTTCCACTCCTTGGGGATTCACATTGCTCACGGACCGCTTATGGAGATTCTTCATAGTTCATACTTGAAAGGTGGTTTAGCTTTGGGGTCTCTATTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAACGCATTTAAGAAGGGGTCGCCTAATATGAACTCTCTCGTGGGATTTGGTTCTGTAGCTGCTTTCATCATTAGTTCGATCTCGCTACTTAACCCCGGCCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTGGGACGTTCTCTGGAGGAAAAGGCAAGGATTCAGGCATCTAGCGATATGAATGAACTGCTTTCACTGATATCCACTCAGTCAAGACTTGTGATTACTTCAACAGAAGGTTCACCTTCTACTGACACTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGGGATTCTGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAACGGTCATTTCAGGAAGAAGTGTTATAGATGAATCCATGCTTACAGGGGAATCACTTCCTGTATTTAAGGAGAAAGGGCTCACAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACTATGATATCGAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACATTTGCATTTTGGTATTTTGTAGGATCACACATATTTCCTGATGTTTTGCTCAACGATATTGCTGGCCCAGAAGGAGATCCTTTGTTGTTGAGTTTAAAACTATCCGTAGATGTTTTGGTTGTTTCTTGTCCATGTGCACTGGGTCTTGCTACGCCCACAGCAATCTTGGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCTGGAATAAATTATATTGCTCTAGACAAGACAGGAACCCTTACCAAAGGAAAACCAGTTGTGTCGGCCATAAGCTCTATCCTTTATGGAGAATCTGAAATTCTTCGGCTTGCTGCTGCAGTGGAGAAAACAGCATCTCACCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCATTAGAGTTGGTACTTCCCGTTACAAAGGGACAGTTGGTTGAGCCAGGTTTTGGAACTTTAGCAGAAGTTGATGGGCATCTGATTGCAGTTGGGTCTTTAGAATGGGTTCATGAACGCTTCCAGACAAGAGCGAACCCATCTGATTTGACAAATCTGGAGAATAGTTTGATGAATCATTCATTGAATACAACATCTTCAAAGTATTCAAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCGATTGCCATATCTGACACTGTGCGTGAAGATGCTGAATCTACTATAACAAGGCTCAAGCAGAAGGGGATTAAAACAGTCCTCTTGTCAGGAGACAGGGAAGAGGCAGTTGCAACTGTAGCAGATACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCACAACAGAAATCTGGATTTATTTCCTCTCTGAAAGCTGCTGGACATCATGTTGCAATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTGGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAAATTTGTGTTGGGCGGTCGCATATAATGTTGTTGCCATTCCCATTGCTGCTGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGATCTCTAGAAAGGTTGGGTCAACTATAGAAATCATATCTTCCCATTCGAACACAGATATGCTTAATTTAAAATAA

Predicted protein sequences of Glyma06g05890

Limit To All Plant Sequences

>Glyma06g05890.1   sequence type=predicted peptide   gene model=Glyma06g05890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATHLFRLPLFSQPKLSFNHTPNHALHFISPLPAKRHRTRNRHRRRILRPPFSVSNSFGTEIGSPEFSLLQSRREAKDSPVLLDVTGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRRIEEEPASVAESLALRLSDCGFPTKRRASSSGVTENVRKWKELVKKKEELVVKSRSRVAFAWTLVALCCGSHASHIFHSLGIHIAHGPLMEILHSSYLKGGLALGSLLGPGRELLFDGLNAFKKGSPNMNSLVGFGSVAAFIISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEGSPSTDTVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDGTVISGRSVIDESMLTGESLPVFKEKGLTVSAGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFVGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGINYIALDKTGTLTKGKPVVSAISSILYGESEILRLAAAVEKTASHPIAKAIVNKAESLELVLPVTKGQLVEPGFGTLAEVDGHLIAVGSLEWVHERFQTRANPSDLTNLENSLMNHSLNTTSSKYSKTVVYVGREGEGIIGAIAISDTVREDAESTITRLKQKGIKTVLLSGDREEAVATVADTVGIENDFVKASLSPQQKSGFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMGKVYQNLCWAVAYNVVAIPIAAGVLLPHFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQISRKVGSTIEIISSHSNTDMLNLK*

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