Report for Sequence Feature Glyma06g05880
Feature Type: gene_model
Chromosome: Gm06
Start: 4202474
stop: 4204354
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g05880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G21920 AT
Annotation by Michelle Graham. TAIR10: YGGT family protein | chr5:7241350-7242765 REVERSE LENGTH=251
SoyBase E_val: 2.00E-70 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF02325 PFAM
YGGT family
JGI ISS
UniRef100_C6TD63 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TD63_SOYBN
SoyBase E_val: 3.00E-167 ISS
UniRef100_F8WLD3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: YGGT family protein n=1 Tax=Citrus unshiu RepID=F8WLD3_CITUN
SoyBase E_val: 5.00E-84 ISS
Expression Patterns of Glyma06g05880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g05880
Paralog Evidence Comments
Glyma04g05890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g05880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g056200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g05880
Coding sequences of Glyma06g05880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g05880.1 sequence type=CDS gene model=Glyma06g05880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGCCAACGACTCGTCCACCGAGATTGATACTAAGAAGCTTTCGAATTGTTGGGGAAATGCTCAAATGCCCTTTGCACTCCCCACTCTCCTCTCTTCACCACCCCAACACCTCCACACATCATTCACCACTGCCGCTGACAATTTTTTCAGATTTCTACACTCCCTTGCTTCTCATAACTCTTTCCTCAACAAAATTCTCTCTCTCCCCTCCGAATTTCACACCCTTTGCGTGCAGATTGGGAAGCAAAGGAACGTGAGGTTGGTTTCTGGTCATAATTTCGCTGCCGTTTTGCCTGGGGATTCGGTGGCAGGGCTGGTGGTGGCGAATGGGGTTCTGAATTTCTTGAACATTTACAACACTTTGCTCATTGTCAGGCTTGTTTTGACATGGTTTCCCAACACTCCTCCTTCCATTGTTAGTCCTCTCAGCACCATATGTGACCCATACCTGAACATATTCCGTGGACTTATTCCCCCTCTGGGAGGAACGCTGGATCTCTCTCCCATCCTAGCATTCTTGGTCCTAAATGCCTTCACCAGCACTGCTTCTGCACTCCCTGCTGAGCTTCCAGTCACAGAACAATCCAAACAAGGCCTTGCAGCACCATTGCACTCCACTAACCTTACTACTTCACAGAAGAAATGGTTGACACGGTTTCAAGGGAACAGGTCAAGGACATCTGGTGCTGATGCTAAATAG
Predicted protein sequences of Glyma06g05880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g05880.1 sequence type=predicted peptide gene model=Glyma06g05880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAANDSSTEIDTKKLSNCWGNAQMPFALPTLLSSPPQHLHTSFTTAADNFFRFLHSLASHNSFLNKILSLPSEFHTLCVQIGKQRNVRLVSGHNFAAVLPGDSVAGLVVANGVLNFLNIYNTLLIVRLVLTWFPNTPPSIVSPLSTICDPYLNIFRGLIPPLGGTLDLSPILAFLVLNAFTSTASALPAELPVTEQSKQGLAAPLHSTNLTTSQKKWLTRFQGNRSRTSGADAK*