Glyma06g05840 - SoyBase

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Report for Sequence Feature Glyma06g05840

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4184240
stop:	4190328
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33210	AT	Annotation by Michelle Graham. TAIR10: F-box family protein \| chr4:16015971-16020697 REVERSE LENGTH=990	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0010252	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin homeostasis	SoyBase	N/A	ISS
GO:0048645	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ formation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
KOG4341	KOG	F-box protein containing LRR	JGI		ISS
PTHR23125	Panther	F-BOX/LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR23125:SF57	Panther	gb def: Hypothetical protein F4I10.140 (Hypothetical protein AT4g33210)	JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_G7I915	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/LRR-repeat protein n=1 Tax=Medicago truncatula RepID=G7I915_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K8G1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8G1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05840

Paralog	Evidence	Comments
Glyma04g05850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g055800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05840

Limit To All Plant Sequences

>Glyma06g05840.1   sequence type=CDS   gene model=Glyma06g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGGGTTTCGCCGAACCGGCGTCGTTCCGACGGAGAGAGTAGTTCTGCTTCCGCTGGGGACACTCGCCAGAAGCGCGCCAGAGTTTACTTCGATTTCGATGGCACTCATTGTATTGTGAAGTGTTCAAATGCTGGGAATTCCAGTGCATCTGTTGAAGAATTTGTGGATTATGATAATTTTCAAGGATCCTCTCTTCTTCGATCCAACGATGATGATGCTGGCGAAGAGAGTAACTTCGACGAAGGAGATGGTAATGACATCTCAAAAGTGGATGATCTAGAGGTCAAGATGGATCTTACGGATGACTTGTTGCATATGGTTTTCTCGTTTTTGGATCATCCCAATCTCTGCAGAGCTGCTAGAGTTTGTAAGCAGTGGCGGACTGCTAGTGCTCATGAAGACTTCTGGAAGAGTTTGAATTTTGAAGACCGGAACATATCTGTAGAGCAATTTGAGGACATCTGTAGGCGTTATCCTAATATAACAGCAATCCGTATGTCTGGTCCTGCCTCTAACCAGCTTGTCATGAAGGCCATCTCTTCGTTAAGAAATCTTGAGGCTTTAACATTGGGAAAAACTCATATAATGGATAATTTTTTCCATGCTTTGGCCGATTGTTCTATGTTGAGAAGACTAAGCATCAATGATGCTATACTTGGCAGTGGTCTGCAGGAGATATCAGTCAACCACGACAGACTGTGTCATCTCCAATTGACAAAGTGCCGTGTGATGCGTATGACAGTCAGGTGCCCACAACTTGAAATTATGTCATTGAAGCGTAGTAACATGGCACAGACTGTGCTCAATTGTCCCCTTTTGCAAGAGCTTGATATAGGCTCTTGCCACAAACTTCCTGATTCTGCTATTCGTTCAGCTGTTACGTCATGCCCACAATTAGTTTCTTTGGACATGTCTAATTGTTCGAGTGTTAGTGATGAAACATTACGGGAAATATCACAGAATTGTGCTAACCTTAGTTTTCTTGATGCATCGTACTGCCCCAACATATCCTTGGAGACTGTTAGACTGCCAATGTTAACAGTTCTGAAGCTTCACAGTTGTGAAGGCATCACTTCTGCCTCTATGACTGCAATATCTCACAGTTATATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTGTTGACATCAGTGTCTTTAGATCTTCCCCGCTTGCAGAATATTAGATTGGTACACTGTCGCAAATTTGCTGATTTGAACTTGATGACCCTAATGTTGTCTTCTATTTTGGTGTCCAATTGCCCTGTGCTCCATCGTATCAACATCACTTCAAATTCACTTCAAAAATTAACAATACCAAAGCAGGACAGCTTAACCACATTAGCTCTGCAATGCCAATCTTTACAAGAAGTGGATCTCTCTGAGTGTGAATCTTTGAATAACTCTGTATGCAATGTTTTTAATGATGGTGGAGGTTGCCCGATGTTGAAATCGTTAGTTCTTGATAATTGTGAGAGTTTGACGTCAGTTCAGTTCATCAGTACCTCTCTAATCAGTCTTTCGCTTGGTGGTTGCCGTGCAATAACTAATCTTGAACTCACATGCCCTAATCTAGAGAAAGTTATTTTGGATGGCTGTGATCATTTGGAAAGAGCATCATTTTGTCCAGTTGGTCTTTTATCTCTCAATTTAGGAATATGTCCAAAATTGAACACACTCAGCATTGAAGCACCGTTTATGGTTTCACTTGAGTTGAAAGGATGTGGTGTACTATCTGAAGCATTCATTAATTGTCCACTCCTAACATCTCTCGATGCTTCCTTTTGCAGCCAACTAACAGATGGTTGCTTGTCTGCAACAACTGTCTCATGCCCACTGATCGAATCATTGATATTGATGTCATGCTCTTCAATTGGTTCAGATGGTCTTCGATCTCTGTATTGTCTTCCAAATTTGATTGTTCTTGACTTATCATACACTTTCTTGGTGAACTTGCAGCCTATCTTTGATTCTTGTTTGCAACTAAAGGTTTTAAAGCTGCAAGCATGCAAATATCTCACTGACACATCACTTGAACCTCTTTACAAAGGAGGTGCTTTACCAGCACTTCAGGAGTTGGACTTATCTTATGGAACTCTTTGTCAATCAGCCATAGATGAGCTTCTTGCTTACTGCACAAACCTCACTCATGTGAGCTTGACTGGCTGTGTGAATATGCATGATTTGAATTGGGGAAGTAGTTGTGGGCAAAGTGACAATTTCCCTGCTGTAAACACCCCATCTAGGGCAAGTTCTAATGAGAATATCCCTGAATCAAGTGAGCAATCCACTCGCTTACTGCAAAACCTCAACTGTGTTGGATGTCCAAATATTAGGAAGGTTGTCATTCCATTGAGGGCAAATTGTTTTCATTTGTTATTTTTAAACCTTTCACTCTCGGCAAATTTGAAAGAGGTTGATGTTACTTGTCTCAACCTATGCTTTCTTAATTTAAGCAATTGTTCCTCTTTGGAAATTTTGAAGCTAGAGTGTCCAAAATTGACCAGTCTGTTCCTTCAGTCTTGCAATATTGACGAGGAAGCTGTTGAAGCTGCCATATCAAAATGCTCTATACTGGAGACCCTTGACGTTCGCTTTTGTCCAAAGATAAGCTCAATGAGCATGGGAAGATTACGCACAATTTGTTCAAGTTTGAAGCGAATATTCAGCAGTTAG

Predicted protein sequences of Glyma06g05840

Limit To All Plant Sequences

>Glyma06g05840.1   sequence type=predicted peptide   gene model=Glyma06g05840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRVSPNRRRSDGESSSASAGDTRQKRARVYFDFDGTHCIVKCSNAGNSSASVEEFVDYDNFQGSSLLRSNDDDAGEESNFDEGDGNDISKVDDLEVKMDLTDDLLHMVFSFLDHPNLCRAARVCKQWRTASAHEDFWKSLNFEDRNISVEQFEDICRRYPNITAIRMSGPASNQLVMKAISSLRNLEALTLGKTHIMDNFFHALADCSMLRRLSINDAILGSGLQEISVNHDRLCHLQLTKCRVMRMTVRCPQLEIMSLKRSNMAQTVLNCPLLQELDIGSCHKLPDSAIRSAVTSCPQLVSLDMSNCSSVSDETLREISQNCANLSFLDASYCPNISLETVRLPMLTVLKLHSCEGITSASMTAISHSYMLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLMTLMLSSILVSNCPVLHRINITSNSLQKLTIPKQDSLTTLALQCQSLQEVDLSECESLNNSVCNVFNDGGGCPMLKSLVLDNCESLTSVQFISTSLISLSLGGCRAITNLELTCPNLEKVILDGCDHLERASFCPVGLLSLNLGICPKLNTLSIEAPFMVSLELKGCGVLSEAFINCPLLTSLDASFCSQLTDGCLSATTVSCPLIESLILMSCSSIGSDGLRSLYCLPNLIVLDLSYTFLVNLQPIFDSCLQLKVLKLQACKYLTDTSLEPLYKGGALPALQELDLSYGTLCQSAIDELLAYCTNLTHVSLTGCVNMHDLNWGSSCGQSDNFPAVNTPSRASSNENIPESSEQSTRLLQNLNCVGCPNIRKVVIPLRANCFHLLFLNLSLSANLKEVDVTCLNLCFLNLSNCSSLEILKLECPKLTSLFLQSCNIDEEAVEAAISKCSILETLDVRFCPKISSMSMGRLRTICSSLKRIFSS*

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