Glyma06g05820 - SoyBase

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Report for Sequence Feature Glyma06g05820

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4168784
stop:	4170169
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G21430	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr5:7222294-7223400 FORWARD LENGTH=218	SoyBase	E_val: 1.00E-59	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF166	Panther		JGI		ISS
UniRef100_G7J8E5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ domain family n=1 Tax=Medicago truncatula RepID=G7J8E5_MEDTR	SoyBase	E_val: 3.00E-82	ISS
UniRef100_I1K8F9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K8F9_SOYBN	SoyBase	E_val: 2.00E-152	ISS

Expression Patterns of Glyma06g05820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05820

Paralog	Evidence	Comments
Glyma04g05810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g055600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05820

Limit To All Plant Sequences

>Glyma06g05820.1   sequence type=CDS   gene model=Glyma06g05820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGTCCTCCACCACCGCCACAGTACGTATTCCTGCTAAGAACATTCCAAACCCTCAAGCGCCAAAAATTGGATTCTCAAGTACAATCGCTTTTACTGCGAAACCGCAAAGAAGATTATTACGCATCAGAAGCTCCTCAGCCGAAACCTCTGGCACAGAGGTAGATTCAAAGAGTTCCATTGAAGTTCCAGAAGAAACATCATCACTCATTTCTGCTCTCAACGTCGAAAAGATTCTCCGTGGCTTACCAATTACAGATGCAGATCATTATGGTAGGCTAGGTATTCCACGAGGATGTCCCTTTGAATTGGTGGGGGGTGCATATAATATCAAGGTTCAGGAATTGAAGAGTCAGAATTTAGAGGAGGATGAACTTGAGAAGAAATTGGAACTTCTCAAAGAATCATACACCATCCTGTCATCGGAGGAAGAAAGAAGAATATATGACTGGAGCTTGGCCAGAGCAGAAAATGCGGACAAATTCGTTTGGCCGTTCGAGGTTGACATAACACAGTCAAAAATTTCAGAAGAAGATCCTCCACAACTGGACCCCGAGGATGTCGGACCAACGAGAGTGGTTGGGTATTTCTTATTAGGATGGATAATGTTGTCTATTGTGTTATCTATTGCACTAAACTTGTAA

Predicted protein sequences of Glyma06g05820

Limit To All Plant Sequences

>Glyma06g05820.1   sequence type=predicted peptide   gene model=Glyma06g05820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSSTTATVRIPAKNIPNPQAPKIGFSSTIAFTAKPQRRLLRIRSSSAETSGTEVDSKSSIEVPEETSSLISALNVEKILRGLPITDADHYGRLGIPRGCPFELVGGAYNIKVQELKSQNLEEDELEKKLELLKESYTILSSEEERRIYDWSLARAENADKFVWPFEVDITQSKISEEDPPQLDPEDVGPTRVVGYFLLGWIMLSIVLSIALNL*

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