Glyma06g05800 - SoyBase

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Report for Sequence Feature Glyma06g05800

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4158731
stop:	4163163
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G12080	AT	Annotation by Michelle Graham. TAIR10: mechanosensitive channel of small conductance-like 10 \| chr5:3898182-3900923 REVERSE LENGTH=734	SoyBase	E_val: 0	ISS
GO:0006820	GO-bp	Annotation by Michelle Graham. GO Biological Process: anion transport	SoyBase	N/A	ISS
GO:0050982	GO-bp	Annotation by Michelle Graham. GO Biological Process: detection of mechanical stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008381	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mechanically-gated ion channel activity	SoyBase	N/A	ISS
KOG4629	KOG	Predicted mechanosensitive ion channel	JGI		ISS
PF00924	PFAM	Mechanosensitive ion channel	JGI		ISS
UniRef100_G7J8E6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fgenesh protein n=1 Tax=Medicago truncatula RepID=G7J8E6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K8F7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8F7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05800

Paralog	Evidence	Comments
Glyma04g05790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g055400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g05800

Limit To All Plant Sequences

>Glyma06g05800.3   sequence type=transcript   gene model=Glyma06g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAAGCAACATGTCTCATTAATATGGATTATGTTTGTTTAGTAAATAAACAATACCTGCTCCGCTATTTGTTTATTACATCCATATACATATAGACATAGTCATAAAGTCTTGGTTTCTGTTTAGTCATTTTGGCCTTTCTTGGGGGCTGTGATGCAAAACCAGAGTTTCCTCTTACCGCAAATCACTCGCACACACATTTCCATCTAAAAACTCTTACTTTCAAATCAGTCTGCCTCTCTGTCCCCAAACAAAACCTTTTGCCGTTGTTTATGACTCACATCACTCACCCTTAATCCCTGTTCTTGTAAATCTATACCTGTGTTTGTGTGTGATTTTTCCAACCTTTGACAACCAACTTTATCCGCCATCCATTGTTTTCTATCTCACATAATTAGTTATAACTCCACCTGATCTGTTTCCTTTCATCTTTTTATTTATATCAGTATCAGTAAGTGCTATTCTTTTTTGTCTGGTACTCCTAACCCAAGTCCAAGTTGTTCTTGGGTTGTGAATGGATGTTATTAATAAGCAGCAAGGTGGTCTAAAATGCGGTGAAGTAACCATGGCTGAGAAGAAGAGAGAAGTGATGGTGGCGATTCCAAACGAGCAGCAGCATAGCAGGGTGAATTCGCCACACAGAATATTAAACGACAACGAGGTTGCCGGAGCAAAGTCGCCACCTTTAAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTTTCACTTCCAACGCCAACCTCACTCGGCGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTTACCCCATTGATGGGACCCTTTTGGAAGATAATGCAAACTCAACTTTGCAAGAAAACTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAAGCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGATCACTCCCAAGACACCGCTGATGGCGTCTCCCGGGCCGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACAAGCGTAGTAGGAGACTGACTGCTAAGATGTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAGCTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGTTTGGGGTTTTGGAGGTTGTGTGTGCTTGTGATGGTGACCTTTTGCGGCATGTTGGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGACCAACTTTTTGCTGAGGAAAAAGGTGCTGTATTTTGTCTATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGCGGGGTCCACCGAACTGAACTGGCCTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAGATCTTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGAATTCAAGAATCGCTCTTCCATCAGTACATTCTGCAGACTCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCGTACAGTGTTGGTCATTTTAGTTTTAGGAGTACAGATGGTAAAGGTGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCAGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTGGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTGGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTATTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTTTATCAAGAACGCAGAGCATTAGCACATGCCTTAAGTGACACTAAAACAGCTGTAAAACAACTAAACAAACTCGTGACCGTACTCCTAGTAGTGGTGAACATAATCGTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCACAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGGTGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTCCTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCCATTGATTTTATGACACCAGCAGAGAAGATTGGGGCACTGAAAGAAAAAATAAAAAGGTACGTGGAGAGAAATCCACAATACTGGCACTCCAATCATGGCTTAGTAGTGAAGGAGATTGAAGATGTAAACAAGATTAAGATGGCTCTCAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAATTGGTGATGGAAGTAAAGAAAATGTTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTCAGACATATTGAACCAAACTCGAGTGTGCTCAATACATGATTCAGCTGCATGCATGTGTGTCTCCTATGTTTCATTTCATCTGTCAAATACCACCAGACCTTTTCTTTGGTTGATTTAATTCATGATAGTTGTGAGTGGTGCTTTAGTAAAGTATATATATATATATATATATATATAGGGCCTTAATTAACAGACAGTATTAACAAATGTTTTTTCCCTAGATATGATAATGAAATTATGAATTCAGGACTCTTATTCTTGACTATACGAACCTTCAAGTGGATCCAATGTAAAAGTAAAATTTTGTCCCACAATTGAACTCCTTCCTGTGTCTGGTTATAATTCTGATGCCTGTTGAATGGAGGTTTAGCTACTTTTCTTTGTCATAGTTGGATTTCCTCTCTCTCTCTCTCC

Coding sequences of Glyma06g05800

Limit To All Plant Sequences

>Glyma06g05800.2   sequence type=CDS   gene model=Glyma06g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTATTAATAAGCAGCAAGGTGGTCTAAAATGCGGTGAAGTAACCATGGCTGAGAAGAAGAGAGAAGTGATGGTGGCGATTCCAAACGAGCAGCAGCATAGCAGGGTGAATTCGCCACACAGAATATTAAACGACAACGAGGTTGCCGGAGCAAAGTCGCCACCTTTAAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTTTCACTTCCAACGCCAACCTCACTCGGCGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTTACCCCATTGATGGGACCCTTTTGGAAGATAATGCAAACTCAACTTTGCAAGAAAACTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAAGCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGATCACTCCCAAGACACCGCTGATGGCGTCTCCCGGGCCGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACAAGCGTAGTAGGAGACTGACTGCTAAGATGTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAGCTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGTTTGGGGTTTTGGAGGTTGTGTGTGCTTGTGATGGTGACCTTTTGCGGCATGTTGGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGACCAACTTTTTGCTGAGGAAAAAGGTGCTGTATTTTGTCTATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGCGGGGTCCACCGAACTGAACTGGCCTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAGATCTTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGAATTCAAGAATCGCTCTTCCATCAGTACATTCTGCAGACTCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCGTACAGTGTTGGTCATTTTAGTTTTAGGAGTACAGATGGTAAAGGTGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCAGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTGGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTGGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTATTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTTTATCAAGAACGCAGAGCATTAGCACATGCCTTAAGTGACACTAAAACAGCTGTAAAACAACTAAACAAACTCGTGACCGTACTCCTAGTAGTGGTGAACATAATCGTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCACAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGGTGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTCCTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCCATTGATTTTATGACACCAGCAGAGAAGATTGGGGCACTGAAAGAAAAAATAAAAAGGTACGTGGAGAGAAATCCACAATACTGGCACTCCAATCATGGCTTAGTAGTGAAGGAGATTGAAGATGTAAACAAGATTAAGATGGCTCTCAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAATTGGTGATGGAAGTAAAGAAAATGTTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTCAGACATATTGAACCAAACTCGAGTGTGCTCAATACATGA

>Glyma06g05800.3   sequence type=CDS   gene model=Glyma06g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTATTAATAAGCAGCAAGGTGGTCTAAAATGCGGTGAAGTAACCATGGCTGAGAAGAAGAGAGAAGTGATGGTGGCGATTCCAAACGAGCAGCAGCATAGCAGGGTGAATTCGCCACACAGAATATTAAACGACAACGAGGTTGCCGGAGCAAAGTCGCCACCTTTAAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTTTCACTTCCAACGCCAACCTCACTCGGCGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTTACCCCATTGATGGGACCCTTTTGGAAGATAATGCAAACTCAACTTTGCAAGAAAACTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAAGCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGATCACTCCCAAGACACCGCTGATGGCGTCTCCCGGGCCGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACAAGCGTAGTAGGAGACTGACTGCTAAGATGTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAGCTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGTTTGGGGTTTTGGAGGTTGTGTGTGCTTGTGATGGTGACCTTTTGCGGCATGTTGGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGACCAACTTTTTGCTGAGGAAAAAGGTGCTGTATTTTGTCTATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGCGGGGTCCACCGAACTGAACTGGCCTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAGATCTTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGAATTCAAGAATCGCTCTTCCATCAGTACATTCTGCAGACTCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCGTACAGTGTTGGTCATTTTAGTTTTAGGAGTACAGATGGTAAAGGTGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCAGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTGGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTGGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTATTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTTTATCAAGAACGCAGAGCATTAGCACATGCCTTAAGTGACACTAAAACAGCTGTAAAACAACTAAACAAACTCGTGACCGTACTCCTAGTAGTGGTGAACATAATCGTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCACAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGGTGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTCCTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCCATTGATTTTATGACACCAGCAGAGAAGATTGGGGCACTGAAAGAAAAAATAAAAAGGTACGTGGAGAGAAATCCACAATACTGGCACTCCAATCATGGCTTAGTAGTGAAGGAGATTGAAGATGTAAACAAGATTAAGATGGCTCTCAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAATTGGTGATGGAAGTAAAGAAAATGTTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTCAGACATATTGAACCAAACTCGAGTGTGCTCAATACATGA

Predicted protein sequences of Glyma06g05800

Limit To All Plant Sequences

>Glyma06g05800.2   sequence type=predicted peptide   gene model=Glyma06g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVINKQQGGLKCGEVTMAEKKREVMVAIPNEQQHSRVNSPHRILNDNEVAGAKSPPLNCASPEIRFMPSPNKPPKVFTSNANLTRRKSLTRSVYSKPKSRFGEQPYPIDGTLLEDNANSTLQENLTVGSPYKASPNNNNKAGTVNRTFSILSVITPKTPLMASPGPAGEDFDEIIYKKVELSKNKRSRRLTAKMLFEWFVFVCIASSLVASLAVGKLKRTEIWGLGFWRLCVLVMVTFCGMLVTRWFMHIVVFLIETNFLLRKKVLYFVYGLKKCVQFFIWLGLVLLTWVLLINRGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKVGASYSVGHFSFRSTDGKGGTKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTTSGLSTISSALDESFDEGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERRALAHALSDTKTAVKQLNKLVTVLLVVVNIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDRVDFSIDFMTPAEKIGALKEKIKRYVERNPQYWHSNHGLVVKEIEDVNKIKMALNVTHTMNFQEFGEKTKRRTELVMEVKKMFEELNIRYNLLPQGIHLRHIEPNSSVLNT*

>Glyma06g05800.3   sequence type=predicted peptide   gene model=Glyma06g05800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVINKQQGGLKCGEVTMAEKKREVMVAIPNEQQHSRVNSPHRILNDNEVAGAKSPPLNCASPEIRFMPSPNKPPKVFTSNANLTRRKSLTRSVYSKPKSRFGEQPYPIDGTLLEDNANSTLQENLTVGSPYKASPNNNNKAGTVNRTFSILSVITPKTPLMASPGPAGEDFDEIIYKKVELSKNKRSRRLTAKMLFEWFVFVCIASSLVASLAVGKLKRTEIWGLGFWRLCVLVMVTFCGMLVTRWFMHIVVFLIETNFLLRKKVLYFVYGLKKCVQFFIWLGLVLLTWVLLINRGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKVGASYSVGHFSFRSTDGKGGTKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTTSGLSTISSALDESFDEGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERRALAHALSDTKTAVKQLNKLVTVLLVVVNIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDRVDFSIDFMTPAEKIGALKEKIKRYVERNPQYWHSNHGLVVKEIEDVNKIKMALNVTHTMNFQEFGEKTKRRTELVMEVKKMFEELNIRYNLLPQGIHLRHIEPNSSVLNT*

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