Glyma06g05780 - SoyBase

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Report for Sequence Feature Glyma06g05780

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4143097
stop:	4144947
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13980	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). \| chr3:4619189-4620262 REVERSE LENGTH=357	SoyBase	E_val: 5.00E-44	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K8F5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8F5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LVK2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAD25600.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LVK2_ARATH	SoyBase	E_val: 2.00E-41	ISS

Expression Patterns of Glyma06g05780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05780

Paralog	Evidence	Comments
Glyma04g05780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g055200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05780

Limit To All Plant Sequences

>Glyma06g05780.1   sequence type=CDS   gene model=Glyma06g05780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACACAACAAAGAGAGAACAACAAAGGTTCAGGTTCCAAAACGACTCTAAAACCCCCTCCTTCTCTTCAACTCTACTCGATAAAGTCTACCGTTCCATCGACCAGAGCAACGACATGAAGCTCTACAACGAAACGATGGGGAAGAAACAGAGCAGAGTCGTCGTCGAAGAAGAAGAGATAACAGCTGCCAGCATTCGCCGCGCTTGTTTGCTTGAAAAATGGAATCGAAGCGAAAAGGTTGGAACTCAATGGAAAACACAAACGCGTTGGCATCATCATCGTCATCACGAACATGACCAGGACGTTATGTTCTTCAGTTCAACTTCGAGTTCCTCGGATTCTAGTTCTGGTTTGTTGTCCTCCTCTGACACGGAATCATTGTACGGACTGAGGTCGAAATCGCGATTTTCGTGTTTCGCGCCGCCGAGGCCGAAGCCAGTGATGACGTCAGCGAGCAATGAGGAGGGTCTAAGAAAGTCAAAATCGAGGGCGTTAAAGATTTACAACAATCTGAAGAAGGTGAAGCAACCCATCTCACCGGGGGGTAAGTTAAGTAATTTTCTTAACTCTCTGTTGGCGACAGGGGGGAGCGTAAAGAAAACCAAAACCTACGACGACACGAAAGCTCCCAAGTCGGGACAAGACTCCACGTGTTCCTCCGCTTCCTCCTTCTCGCGGTCTTGTTTGAGCAAGGCTACACCTTCCTCCTCTAAAGACAAGTTGCGAGATGGAGTTAAGCGAACGGTGCGTTTTTACCCCGTGAGTGTGATCCTGAACGAGGATTCTCGACCGTGTGGGCATAAGTGTTTGTATGAAGAGGACACGCGCGTAATGGCGTGGAAAATTGGGCGCAAGAAGAATGAAGATGAAGAATTAAGGGTCGTGGATAACAGTAGGCGCGTGGAGGAGGCTGCTAGAGAGTTCTTGAAAGAGTATCGTCGAAGCCAGAAGAAGAGCGATTTCATTAATTTGAGGGATTTTACTAATTTGGATAATGACGATGATGATGATGATGCAGCGAGTTGTTCAAGTTCGGATCTGTTCGAGCTTGATCACCTAGCGGTGATGGGAAATAATAGGTATCGTGAGGATCTTCCCGTTTACGAGACTACTTATGTTAGTACTAATCGCGCCATTGCTAATGGCCTCATATAA

Predicted protein sequences of Glyma06g05780

Limit To All Plant Sequences

>Glyma06g05780.1   sequence type=predicted peptide   gene model=Glyma06g05780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYTTKREQQRFRFQNDSKTPSFSSTLLDKVYRSIDQSNDMKLYNETMGKKQSRVVVEEEEITAASIRRACLLEKWNRSEKVGTQWKTQTRWHHHRHHEHDQDVMFFSSTSSSSDSSSGLLSSSDTESLYGLRSKSRFSCFAPPRPKPVMTSASNEEGLRKSKSRALKIYNNLKKVKQPISPGGKLSNFLNSLLATGGSVKKTKTYDDTKAPKSGQDSTCSSASSFSRSCLSKATPSSSKDKLRDGVKRTVRFYPVSVILNEDSRPCGHKCLYEEDTRVMAWKIGRKKNEDEELRVVDNSRRVEEAAREFLKEYRRSQKKSDFINLRDFTNLDNDDDDDDAASCSSSDLFELDHLAVMGNNRYREDLPVYETTYVSTNRAIANGLI*

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