Glyma06g05750 - SoyBase

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Report for Sequence Feature Glyma06g05750

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4106853
stop:	4108704
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72820	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein \| chr1:27403457-27404506 FORWARD LENGTH=349	SoyBase	E_val: 2.00E-160	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
KOG0765	KOG	Predicted mitochondrial carrier protein	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF94	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_G7J8D0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CCP-like protein n=1 Tax=Medicago truncatula RepID=G7J8D0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K8F2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8F2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05750

Paralog	Evidence	Comments
Glyma04g05740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Glyma20g01945	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g054800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05750

Limit To All Plant Sequences

>Glyma06g05750.1   sequence type=CDS   gene model=Glyma06g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTGGGAACCGCGGAGGACGAATCCGGTTCCGAAATCCACATCCCAGCCGAAATCGACTGGCACATGCTGGACAAATCCAAGTTCTTCTTCCTCGGCGCCGCCTTATTCTCCGGCGTGTCGTGCGCACTCTACCCCATGGTCGTGTTGAAGACGCGTCAGCAAGTTTCCTCCTCACGCTTCTCCTGCCTCAACATCTCCTGCGCCATTCTCCGCCACGAGGGCCTCCGCGGCTTCTACAAGGGCTTCGGAACCTCCCTCATGGGAACCATCCCCGCACGTGCGCTCTACATGGCCTCCCTCGAGATCACCAAAAGCAACGTCGCCACCGCCTTCCTCCAATTCGGCTTCTCCGAGACCACCGCCGTGGCTGTGGCCAACGCCGCCGCGGGCGTCACCTCCGCCATGGCTGCCCAGCTCGTGTGGACCCCAATTGATGTCGTGAGTCAGCGGCTCATGGTTCAGGGGAGTGGCGGGAGTAAAACCACAGTGCTCGCGAATCTCAATTCGGAAAATTACAGAAATGGGTTTGATGCTTTTAGGAAAATTATGTGTGCTGATGGAGCGATAGGCTTTTATAGAGGCTTTGGGATTTCTATATTGACTTATGCGCCTTCCAATGCGGTTTGGTGGACTTCTTATTCCATGGTTCATAGACTCATTTGGGGTGCTTTTGGTTCTTACATGGGAAATAACAATGGTAGAAAGGGAAATGAAAAGAATGATAGTAATAAGTATAGCAGGCCTGATTCGAAGGCAATGGTGGCGGTTCAAGGGTTGAGTGCTGTTATGGCAAGTGGGGTATCTGCGATTGTGACAATGCCGCTTGATACGATAAAGACGAGGTTGCAGGTGTTGGATCTTGAAGAGGGGAATGGGAGAAGGAGGCCTTTGACTTTTGTTCAGACGGTGAGGAATTTGGTGAAGGAAGGTGGGTTGCTTGCTTGTTACAGAGGATTGGGTCCGAGATGGGCTTCCATGTCCATGTCTGCCACAACTATGATTACTACTTATGAGTTTTTGAAAAGAATGTCTACCAAGAATCAAGAGGATTTGACTCCATCATAG

Predicted protein sequences of Glyma06g05750

Limit To All Plant Sequences

>Glyma06g05750.1   sequence type=predicted peptide   gene model=Glyma06g05750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLGTAEDESGSEIHIPAEIDWHMLDKSKFFFLGAALFSGVSCALYPMVVLKTRQQVSSSRFSCLNISCAILRHEGLRGFYKGFGTSLMGTIPARALYMASLEITKSNVATAFLQFGFSETTAVAVANAAAGVTSAMAAQLVWTPIDVVSQRLMVQGSGGSKTTVLANLNSENYRNGFDAFRKIMCADGAIGFYRGFGISILTYAPSNAVWWTSYSMVHRLIWGAFGSYMGNNNGRKGNEKNDSNKYSRPDSKAMVAVQGLSAVMASGVSAIVTMPLDTIKTRLQVLDLEEGNGRRRPLTFVQTVRNLVKEGGLLACYRGLGPRWASMSMSATTMITTYEFLKRMSTKNQEDLTPS*

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