Glyma06g05670 - SoyBase

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Report for Sequence Feature Glyma06g05670

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4051491
stop:	4057619
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72770	AT	Annotation by Michelle Graham. TAIR10: homology to ABI1 \| chr1:27390998-27392851 FORWARD LENGTH=511	SoyBase	E_val: 8.00E-168	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0010029	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of seed germination	SoyBase	N/A	ISS
GO:0008287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF115	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_G7J8B9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Abscisic insensitive 1B n=1 Tax=Medicago truncatula RepID=G7J8B9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A430	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A430 related cluster n=1 Tax=unknown RepID=UPI000233A430	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05670

Paralog	Evidence	Comments
Glyma04g05661	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g054000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g05670

Limit To All Plant Sequences

>Glyma06g05670.3   sequence type=transcript   gene model=Glyma06g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAAAGTTCATGTCTTTATTTCTTCTGTTGATTCTTTGTTCCTTCTTCAATGATGGGTCTCAGGTGTCACAGTCAGAGGACAAGGCAGTGAGAAGAGAAAAGAAGAGAAGGAAGAAACGAGACTCTACCATACATGGTTGACAAAATTTGATAAAGTTTGTTTCTTTCAAGTTTTGAGCTGTTTCTCTCTCACTAGAGTTGACGGAGGTAGACAGAGAAGAATATGATAATGGTTGAAAAAGGGTGTGGTCTAGCTGATTTTGGTTGAAATTTCCACAAATGGAAATTCGGATTCATTGTTGTTGACCAGATCTGACTACCCCCATTTCACTTTCACCACCTTTTAACTAGTCCATGATTTGCATAGGTTGAATTTGTCTCCTCCTTTGGGCTTCTCAGACATGGGAAATGGTTTTTTTAAATCCATTCCGGGATCGTTTTCAATCAGAAAAGGTGTTAAATTAGTTAAGGTATGACAGGCTGTGTGATATCAATAGGGTGGGAGGGTAACTTTTTGTACTACATTGACAAGGATTTTGATGGAGGAGATGTCAACCACGGTTACAGTGCCATTGAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATAGCTACCCACATGGATGTATCAAGAATTAAACTGATGTCAGATGCTGGGTTGTTATCCAATTCTATAACTAAGGTTTCCAATGAGACTTTTATAGGTTCAGATGAGGATCATGATGGTGGTCGTCATGAGGATGAAGTTGGTATTACAGCGGTCACAGCTCCAGAACAGCAAAGAGAAGGAGAAATTCCGATGTCGGATACAATATCCCAAAATATAAGCTCTCTGGTTGTTGGTGATGAAGTTTTAACCCCAGAAATTGAGGAGGATGATTTGATATCACTGGAAGGTGATCCAATTATTGATAGCTCTTCACTTTCAGTAGCCAGTGAGAATAGTAGTTTTTGTGGAGATGAGTTCATCAGTTCTGAGGTTTCTTCAGATTTAGGGACAACAAGTTCCATAGAGATAGGGAAGAGTGTCTCCACTGTCAAAATTGCTGCCAGGGCTACTGATTTGGGTGCGTCAAATGTAGAGGTTGATGTAGCAGTGAGCCTTGAAGAGACAGGGGTTAGATCTGGCCAAACGCCTACTACAGGTGTTTTTCATCAACTAACTCTGGAAAGATCTGTGAGTGGAACAGCTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCGCTATGGGGATTTACTTCTGTGTGTGGAAAAAGACCTGAGATGGAAGACGCAGTTGCAACTGTACCTCGATTTTTGAAAATTCCTATTGAAATGCTAACTGGTGATAGATTACCTGATGGAATAAACAAATGTTTCAGTCAGCAGATAATACATTTCTTTGGAGTCTATGATGGGCATGGTGGCTCTCAGGTGGCAAAATATTGCCGGGAGCGCATGCATTTGGCCTTGGCTGAGGAAATAGAATCTGTCAAGGAAGGTCTATTAGTTGAAAATACCAAGGTTGATTGTCGAGATCTGTGGAAAAAAGCTTTCACCAATTGTTTTTTGAAGGTTGATTCTGAAGTTGGGGGGGGAGTTAATTGTGAGCCTGTTGCCCCAGAAACTGTTGGATCCACTTCTGTTGTTGCTATTATCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTATGTCGTGCCAAAGAACCCATGGCACTATCTGTTGATCATAAACCAAATCGAGATGATGAATATGCAAGAATTGAGGCTGCTGGAGGCAAGGTGATACAATGGAATGGCCACCGAGTATTTGGTGTTCTAGCAATGTCAAGGTCTATTGGTGATAGGTATTTGAAACCATGGATTATTCCGGACCCCGAGGTGACGTTTCTTCCTCGTGCAAAAGATGATGAGTGCCTCATTCTGGCCAGTGATGGCCTGTGGGATGTCATGACCAACGAAGAGGTGTGTGACATTGCTCGGCGGCGCTTACTTCTCTGGCACAAGAAAAATGGCTTGGCACTGCCCTCAGAAAGGGGAGAGGGAATTGATCCTGCTGCTCAAGCAGCTGCAGACTACCTATCGAACCGTGCTCTTCAGAAAGGAAGCAAAGACAACATCACTGTAATTGTGGTGGATTTGAAAGCTCAAAGGAAATTTAAGAGCAAGACATGACTGTTTCTTCAACTGCATCTGGGTGTTGGAAGATGATGGAAAACTGAATATGATCCAGTTTAGTTTTTTTGCCCATAAATTTTTCATATGGGCATCAGAATAGCACCCTGTACAATACATCCACCTCTCCCTAGAACTCTCTCAACTGATTAAGAGTCTCCTTGTACACTGCCACATTGTGGCCATGTAAATCTTTGCCTGCTTTTGTAGGGGTAGGTACAGGAGGCCAGTTCCATGCCTATCTGTCACCATATTGTATTCATTATTATGCCTCCGAGAACAAAGGCTCTGTGAGGTATTTACTTCATATTGTTTTAACCTGTGTTGTTTATATATATATATATAAAAAAAAAAAATGTAGTAGCTAATTGGGCATTGTTGTTTACAAGTTGTGATCCACCCCTTCTAATAATGTAGCAAAGCAAAATTCTCTATTTGGAGCTTACTCTTGAAATTTATGTCGGTGGTGGATTGATATCATTGGCTATGACTCAATTCCAGTGGTTGTACTACAATAATGATGGTAGGGACAATTATGGACAAGGTTGCTTAAGAAAAATATCAGCTATCCTTTTTTTTTTTTTGGGGGGATGGATTGTTTAACTGTGCTTATCATTGTTCAGAGACAATATGGCTTATCAAACACTGTTGAACCTTG

Coding sequences of Glyma06g05670

Limit To All Plant Sequences

>Glyma06g05670.2   sequence type=CDS   gene model=Glyma06g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGATGTCAACCACGGTTACAGTGCCATTGAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATAGCTACCCACATGGATGTATCAAGAATTAAACTGATGTCAGATGCTGGGTTGTTATCCAATTCTATAACTAAGGTTTCCAATGAGACTTTTATAGGTTCAGATGAGGATCATGATGGTGGTCGTCATGAGGATGAAGTTGGTATTACAGCGGTCACAGCTCCAGAACAGCAAAGAGAAGGAGAAATTCCGATGTCGGATACAATATCCCAAAATATAAGCTCTCTGGTTGTTGGTGATGAAGTTTTAACCCCAGAAATTGAGGAGGATGATTTGATATCACTGGAAGGTGATCCAATTATTGATAGCTCTTCACTTTCAGTAGCCAGTGAGAATAGTAGTTTTTGTGGAGATGAGTTCATCAGTTCTGAGGTTTCTTCAGATTTAGGGACAACAAGTTCCATAGAGATAGGGAAGAGTGTCTCCACTGTCAAAATTGCTGCCAGGGCTACTGATTTGGGTGCGTCAAATGTAGAGGTTGATGTAGCAGTGAGCCTTGAAGAGACAGGGGTTAGATCTGGCCAAACGCCTACTACAGGTGTTTTTCATCAACTAACTCTGGAAAGATCTGTGAGTGGAACAGCTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCGCTATGGGGATTTACTTCTGTGTGTGGAAAAAGACCTGAGATGGAAGACGCAGTTGCAACTGTACCTCGATTTTTGAAAATTCCTATTGAAATGCTAACTGGTGATAGATTACCTGATGGAATAAACAAATGTTTCAGTCAGCAGATAATACATTTCTTTGGAGTCTATGATGGGCATGGTGGCTCTCAGGTGGCAAAATATTGCCGGGAGCGCATGCATTTGGCCTTGGCTGAGGAAATAGAATCTGTCAAGGAAGGTCTATTAGTTGAAAATACCAAGGTTGATTGTCGAGATCTGTGGAAAAAAGCTTTCACCAATTGTTTTTTGAAGGTTGATTCTGAAGTTGGGGGGGGAGTTAATTGTGAGCCTGTTGCCCCAGAAACTGTTGGATCCACTTCTGTTGTTGCTATTATCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTATGTCGTGCCAAAGAACCCATGGCACTATCTGTTGATCATAAACCAAATCGAGATGATGAATATGCAAGAATTGAGGCTGCTGGAGGCAAGGTGATACAATGGAATGGCCACCGAGTATTTGGTGTTCTAGCAATGTCAAGGTCTATTGGTGATAGGTATTTGAAACCATGGATTATTCCGGACCCCGAGGTGACGTTTCTTCCTCGTGCAAAAGATGATGAGTGCCTCATTCTGGCCAGTGATGGCCTGTGGGATGTCATGACCAACGAAGAGGTGTGTGACATTGCTCGGCGGCGCTTACTTCTCTGGCACAAGAAAAATGGCTTGGCACTGCCCTCAGAAAGGGGAGAGGGAATTGATCCTGCTGCTCAAGCAGCTGCAGACTACCTATCGAACCGTGCTCTTCAGAAAGGAAGCAAAGACAACATCACTGTAATTGTGGTGGATTTGAAAGCTCAAAGGAAATTTAAGAGCAAGACATGA

>Glyma06g05670.3   sequence type=CDS   gene model=Glyma06g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGATGTCAACCACGGTTACAGTGCCATTGAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATAGCTACCCACATGGATGTATCAAGAATTAAACTGATGTCAGATGCTGGGTTGTTATCCAATTCTATAACTAAGGTTTCCAATGAGACTTTTATAGGTTCAGATGAGGATCATGATGGTGGTCGTCATGAGGATGAAGTTGGTATTACAGCGGTCACAGCTCCAGAACAGCAAAGAGAAGGAGAAATTCCGATGTCGGATACAATATCCCAAAATATAAGCTCTCTGGTTGTTGGTGATGAAGTTTTAACCCCAGAAATTGAGGAGGATGATTTGATATCACTGGAAGGTGATCCAATTATTGATAGCTCTTCACTTTCAGTAGCCAGTGAGAATAGTAGTTTTTGTGGAGATGAGTTCATCAGTTCTGAGGTTTCTTCAGATTTAGGGACAACAAGTTCCATAGAGATAGGGAAGAGTGTCTCCACTGTCAAAATTGCTGCCAGGGCTACTGATTTGGGTGCGTCAAATGTAGAGGTTGATGTAGCAGTGAGCCTTGAAGAGACAGGGGTTAGATCTGGCCAAACGCCTACTACAGGTGTTTTTCATCAACTAACTCTGGAAAGATCTGTGAGTGGAACAGCTGGTAGAAGTGTTTTTGAATTAGATTGTACCCCGCTATGGGGATTTACTTCTGTGTGTGGAAAAAGACCTGAGATGGAAGACGCAGTTGCAACTGTACCTCGATTTTTGAAAATTCCTATTGAAATGCTAACTGGTGATAGATTACCTGATGGAATAAACAAATGTTTCAGTCAGCAGATAATACATTTCTTTGGAGTCTATGATGGGCATGGTGGCTCTCAGGTGGCAAAATATTGCCGGGAGCGCATGCATTTGGCCTTGGCTGAGGAAATAGAATCTGTCAAGGAAGGTCTATTAGTTGAAAATACCAAGGTTGATTGTCGAGATCTGTGGAAAAAAGCTTTCACCAATTGTTTTTTGAAGGTTGATTCTGAAGTTGGGGGGGGAGTTAATTGTGAGCCTGTTGCCCCAGAAACTGTTGGATCCACTTCTGTTGTTGCTATTATCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTATGTCGTGCCAAAGAACCCATGGCACTATCTGTTGATCATAAACCAAATCGAGATGATGAATATGCAAGAATTGAGGCTGCTGGAGGCAAGGTGATACAATGGAATGGCCACCGAGTATTTGGTGTTCTAGCAATGTCAAGGTCTATTGGTGATAGGTATTTGAAACCATGGATTATTCCGGACCCCGAGGTGACGTTTCTTCCTCGTGCAAAAGATGATGAGTGCCTCATTCTGGCCAGTGATGGCCTGTGGGATGTCATGACCAACGAAGAGGTGTGTGACATTGCTCGGCGGCGCTTACTTCTCTGGCACAAGAAAAATGGCTTGGCACTGCCCTCAGAAAGGGGAGAGGGAATTGATCCTGCTGCTCAAGCAGCTGCAGACTACCTATCGAACCGTGCTCTTCAGAAAGGAAGCAAAGACAACATCACTGTAATTGTGGTGGATTTGAAAGCTCAAAGGAAATTTAAGAGCAAGACATGA

Predicted protein sequences of Glyma06g05670

Limit To All Plant Sequences

>Glyma06g05670.2   sequence type=predicted peptide   gene model=Glyma06g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEMSTTVTVPLRVGNSVCDKPTIATHMDVSRIKLMSDAGLLSNSITKVSNETFIGSDEDHDGGRHEDEVGITAVTAPEQQREGEIPMSDTISQNISSLVVGDEVLTPEIEEDDLISLEGDPIIDSSSLSVASENSSFCGDEFISSEVSSDLGTTSSIEIGKSVSTVKIAARATDLGASNVEVDVAVSLEETGVRSGQTPTTGVFHQLTLERSVSGTAGRSVFELDCTPLWGFTSVCGKRPEMEDAVATVPRFLKIPIEMLTGDRLPDGINKCFSQQIIHFFGVYDGHGGSQVAKYCRERMHLALAEEIESVKEGLLVENTKVDCRDLWKKAFTNCFLKVDSEVGGGVNCEPVAPETVGSTSVVAIICSSHIIVSNCGDSRAVLCRAKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVTFLPRAKDDECLILASDGLWDVMTNEEVCDIARRRLLLWHKKNGLALPSERGEGIDPAAQAAADYLSNRALQKGSKDNITVIVVDLKAQRKFKSKT*

>Glyma06g05670.3   sequence type=predicted peptide   gene model=Glyma06g05670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEMSTTVTVPLRVGNSVCDKPTIATHMDVSRIKLMSDAGLLSNSITKVSNETFIGSDEDHDGGRHEDEVGITAVTAPEQQREGEIPMSDTISQNISSLVVGDEVLTPEIEEDDLISLEGDPIIDSSSLSVASENSSFCGDEFISSEVSSDLGTTSSIEIGKSVSTVKIAARATDLGASNVEVDVAVSLEETGVRSGQTPTTGVFHQLTLERSVSGTAGRSVFELDCTPLWGFTSVCGKRPEMEDAVATVPRFLKIPIEMLTGDRLPDGINKCFSQQIIHFFGVYDGHGGSQVAKYCRERMHLALAEEIESVKEGLLVENTKVDCRDLWKKAFTNCFLKVDSEVGGGVNCEPVAPETVGSTSVVAIICSSHIIVSNCGDSRAVLCRAKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVTFLPRAKDDECLILASDGLWDVMTNEEVCDIARRRLLLWHKKNGLALPSERGEGIDPAAQAAADYLSNRALQKGSKDNITVIVVDLKAQRKFKSKT*

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