Glyma06g05650 - SoyBase

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Report for Sequence Feature Glyma06g05650

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4039800
stop:	4046192
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33090	AT	Annotation by Michelle Graham. TAIR10: aminopeptidase M1 \| chr4:15965915-15970418 REVERSE LENGTH=879	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0010359	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of anion channel activity	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004177	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aminopeptidase activity	SoyBase	N/A	ISS
GO:0008237	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1046	KOG	Puromycin-sensitive aminopeptidase and related aminopeptidases	JGI		ISS
PTHR11533	Panther	PROTEASE M1 ZINC METALLOPROTEASE	JGI		ISS
PTHR11533:SF97	Panther		JGI		ISS
PF01433	PFAM	Peptidase family M1	JGI		ISS
UniRef100_G7J8C0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Puromycin-sensitive aminopeptidase n=1 Tax=Medicago truncatula RepID=G7J8C0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K8E3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8E3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05650

Paralog	Evidence	Comments
Glyma04g05620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g053800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05650

Limit To All Plant Sequences

>Glyma06g05650.1   sequence type=CDS   gene model=Glyma06g05650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCAGTTCAAAGGAAAGCCTCGTCTTCCCAAATTCGCCGTCCCCAAACGCTACGACCTTAGGCTCAAGCCCGACCTCGTCGCGCACCGTTTCGCAGGTTCCGTCGCCGTCCACCTCGACATCGTCCCCGCCACCTCTTTCATTGTTCTCAATGCCGCCGAACTCTCCGTCAGCAACGACGCTGTTTCATTCACCAACCAAGACTCCTCCAAGGTTATTAAACCTTCACGAGTTGAGTTGTTTGAAAATGATGAGATTCTGGTTTTGGAGTTCCCAGAGGAATTACCTATTGGGTTCGGTGTCTTGTCCATTCGCTTTGAAGGAATCTTGAATGATAGAATGAAAGGCTTCTACCGAAGTACCTATGAGCACAATGGTGAGAAGAAGACTATGGCAGTTACACAGTTTGCACCGGCTGATGCCAGGCGATGCTTTCCTTGTTGGGATGAACCTTCTTGCAAGGCTTCTTTCAAGATCACATTGGATGTGCCTTCAGAGCTTGTTGCTCTTTCCAACATGCCAATTGTTGAAGAAATAACAGATGGAAATCTCAAAACAGTTTCATATCAAGAATCACCAATCATGTCTACATATTTGGTTGCGGTTGTTGTTGGTTTGTTTGATTATGTGGAAGATCATACCTCAGATGGGGTCAAAGTCCGGGTGTATTGTCAAGTTGGTAAGGCAAACCAGGGGAAATTTGCACTTGATGTAGCTGTGAAATCTTTGGAACTATACAAGGGTTACTTTGCCACTCCCTACTCACTGCCAAAATTGGATATGATTGCAATCCCTGATTTCGCTGCTGGAGCCATGGAGAACTATGGTCTGGTTACATATCGGGAGACTGCTTTGCTATATGATGACCAGCATTCTGCTGCTGCAAATAAACAGAGGGTTGCAACTGTAGTAGCTCATGAACTAGCACACCAATGGTTTGGCAACCTTGTTACAATGGAGTGGTGGACACATGTATGGCTGAATGAGGGGTTTGCGACATGGGTGAGCTATTTAGCAACTGATAACTGTTTTCCTGAGTGGAAAATATGGTCTCAATTTCTTCATGAATCTACTGAGGGTCTTAGGTTGGATGGACTTGCGGAATCCCACCCAATTGAGGTGGAAATCAATCATGCTTGTGAGATTGATGAAATATTTGATGCAATAAGTTATAAAAAAGGTGCATCCGTAATCAGGATGCTGCAAAGCTATCTTGGTGCCGAATGCTTTCAGAGATCGCTGGCTTCATATATAAAAAGACATGCTTGCTCAAATGCTAAGACTGAGGATCTATGGGCTGCACTTGAGGAAGGATCTGGTGAACATGTGAACAAGTTAATGACCTCATGGACAAAGCAGAAAGGATATCCTGTTGTATCTGTTAAAGTCAATGATCAGAAATTGGAATTTAATCAGTCACAATTCTTGTCAAGTGGTGCTCAAGGAGAAGGCCATTGGATAGTTCCAATAACATTATGCTTTGGCTCTTATGATGTCTGCAAGAGTTTCCTCTTGCAATCAAAATCTGAAACACATGAAGTCAAAGAGTTCCTTGGTTCCACAGACAAAGGTGTAAATTGTTGGATTAAACTTAATGTGGATCAGGCTGGTTTCTACAGGGTGAAATATGATGAGCTGCTTGCTGCTAGACTTAGATATGCAGTAGAGAAACAACTCTTATCTGCATCTGACCGGTTTGGCATTTTGGATGATTCATTTGCACTCTGTATGGCTTGCCAAGAATCATTGCCCTCCTTGATTAACTTGATGGGATCTTACAGGGAGGAAGTTGATTATACCGTGCTGTCTAACCTGATAACTATAAGTCTTAAAGTTCAACGTATTGCAGCTGATGCAGTACCAGACTTACTAGAATATTTCAAGCAGTTCTTTATTAACCTTTTCCAGTACTCTGCTGAGAGGCTTGGTTGGGAGCCTAAACCAGGAGAAAGTCATGTAGATGCAATGTTGAGAGGAGAAATTTTGACAGCCCTTGCTATGTTTGGTCACAATTTGACACTGGATGAAGCAAGCAAGCGTTTTCTGGCATTCTTAGAAAACAGAAATACACCACTTCTTCCACCCGATATAAGAAAGGCGGCATATGTAGCTGTAATGCAACGGGCAAGCAAATCTAACAGATCGGATTATGAATCACTTTTGAAAGTATATCGGGAAACTGACCTAAGCCAGGAGAAAACACGTATTCTGGGCTCTCTGGCATCTTCACGTGATCCAGATCTAATTCTTGAAGCTCTTAACTTCATGTTGTCATCTGAGGTTCGTAGTCAGGATGCTGTTTTTGGACTTGCTGTTACTCAGGAAGGACGAAATGTAGCTTGGGCATGGCTTAAGGAAAATTGGGAACACCTCATAAAAACATATGGTTCAGGATTTTTGATAACTCGGTTTGTCAGTGCAGTTGTCTCACCGTTTGCTTCCTTTGAGAAGGCCAAGGAGGTAGAGGAATTCTTTGCTAGCCACGCTATGCCATTCATTGCTAGAACGTTAAGGCAGAGCCTTGAGCGGGTCAATATCAATGCAAACTGGGTTCAGAATGTTCAGAACGAAAATAGGCTTGGTGATGCTGTGAAGGAATTGGCATACAGAAAATACTAG

Predicted protein sequences of Glyma06g05650

Limit To All Plant Sequences

>Glyma06g05650.1   sequence type=predicted peptide   gene model=Glyma06g05650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQFKGKPRLPKFAVPKRYDLRLKPDLVAHRFAGSVAVHLDIVPATSFIVLNAAELSVSNDAVSFTNQDSSKVIKPSRVELFENDEILVLEFPEELPIGFGVLSIRFEGILNDRMKGFYRSTYEHNGEKKTMAVTQFAPADARRCFPCWDEPSCKASFKITLDVPSELVALSNMPIVEEITDGNLKTVSYQESPIMSTYLVAVVVGLFDYVEDHTSDGVKVRVYCQVGKANQGKFALDVAVKSLELYKGYFATPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHVWLNEGFATWVSYLATDNCFPEWKIWSQFLHESTEGLRLDGLAESHPIEVEINHACEIDEIFDAISYKKGASVIRMLQSYLGAECFQRSLASYIKRHACSNAKTEDLWAALEEGSGEHVNKLMTSWTKQKGYPVVSVKVNDQKLEFNQSQFLSSGAQGEGHWIVPITLCFGSYDVCKSFLLQSKSETHEVKEFLGSTDKGVNCWIKLNVDQAGFYRVKYDELLAARLRYAVEKQLLSASDRFGILDDSFALCMACQESLPSLINLMGSYREEVDYTVLSNLITISLKVQRIAADAVPDLLEYFKQFFINLFQYSAERLGWEPKPGESHVDAMLRGEILTALAMFGHNLTLDEASKRFLAFLENRNTPLLPPDIRKAAYVAVMQRASKSNRSDYESLLKVYRETDLSQEKTRILGSLASSRDPDLILEALNFMLSSEVRSQDAVFGLAVTQEGRNVAWAWLKENWEHLIKTYGSGFLITRFVSAVVSPFASFEKAKEVEEFFASHAMPFIARTLRQSLERVNINANWVQNVQNENRLGDAVKELAYRKY*

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