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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33100 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/apoptosis (InterPro:IPR007918); Has 214 Blast hits to 214 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:15971701-15972342 FORWARD LENGTH=92 | SoyBase | E_val: 7.00E-33 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3481 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR21329 | Panther | N-ACETYLGLUCOSAMINYL TRANSFERASE COMPONENT GPI1-RELATED | JGI | ISS | |
| PTHR21329:SF9 | Panther | OS09G0361700 PROTEIN | JGI | ISS | |
| PF02297 | PFAM | Cytochrome oxidase c subunit VIb | JGI | ISS | |
| PF05254 | PFAM | Uncharacterised protein family (UPF0203) | JGI | ISS | |
| UniRef100_C6SXG6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXG6_SOYBN | SoyBase | E_val: 3.00E-55 | ISS |
| UniRef100_I3XLL9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2C n=1 Tax=Cucumis sativus RepID=I3XLL9_CUCSA | SoyBase | E_val: 3.00E-28 | ISS |
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Glyma06g05640 not represented in the dataset |
Glyma06g05640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g053600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g05640.4 sequence type=transcript gene model=Glyma06g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTCGGATTGCTTCCTATAGAAAGTAAAAATGAATAAATTTTGAATGGGAAAATGTTGACAAGAATTTAAATTTCTAAAATCTAAAATAAACATAATGATGTAGTCCTACTACAGTTTCCATGGATCAACTACACTTGGTTGACACTTGGCAGGTTTAATTTGAAAGCTCCGTTGCTAGACGATCACGGTTGACGCCAATTGCTCCCTCCCTCCATGAGATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTGAACATTTGGAAGATAAGCATCTGATTCGTTTCTTACAAGCTGACGGCGTTGTTCAAGACAGTGGTGTTGCTTCTCAGTAACTTGTAGGGAGTAAGGTAACTAACTACGAAGCTTATTCATGTGACGACCACTGTTGATGTGGTATTTGAAGTTACGCTGCCTGTACGTTGTATCTTTGTTTGAACAGTGCAAGCTTTGTATTTCCGTCAGAAATCTTGGTGGTTTTAAATCATGGTCTATTGCAATGGGTTGAAATGAACATTTGGTGAGGGTGAATTATGGTAACTTGGCAAGTGACAATTTTTTAATGCCATCTTTCAAGAAATTCTAAAGGAGAGGGGAATGTTTAACTAATCCGCCAGTGAAGAGATTTCCAGGACGAAGGTGAAGTTTAAACGTCCTCTCTAAAAAACAAAGGTTTAATTAGTCTGGGGTCTCTAAACTCTTACAAATTTACAAATAAGTCCCTGATTTTTTTTCGAAGTGGGTCCTGAACTTTTTTTTAATACAGTTTTGAAATCAAATTTATATGCCTAGTCGTTGAATGTCGCACGCGATCACTGTAAATCTAGGGGTATTTGTGTAATTTCACAAAATTTTAGGGGGTGATTAGTGTTTTTTTACCCTTTTTCTTTACCACCGCATCTATTTGTAAAAACATTGTGCTAGTAAAATTTACAAAAGGAGTCAATTAACGGT
>Glyma06g05640.3 sequence type=CDS gene model=Glyma06g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTGAACATTTGGAAGATAAGCATCTGATTCGTTTCTTACAAGCTGACGGCGTTGTTCAAGACAGTGGTGTTGCTTCTCAGTAA >Glyma06g05640.4 sequence type=CDS gene model=Glyma06g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTGAACATTTGGAAGATAAGCATCTGATTCGTTTCTTACAAGCTGACGGCGTTGTTCAAGACAGTGGTGTTGCTTCTCAGTAA
>Glyma06g05640.3 sequence type=predicted peptide gene model=Glyma06g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MREKKASKTSSSTSPCAQLRDAYHNCFNRWYAEKFMKGHWDKQECVSEWQKYRACLSEHLEDKHLIRFLQADGVVQDSGVASQ* >Glyma06g05640.4 sequence type=predicted peptide gene model=Glyma06g05640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MREKKASKTSSSTSPCAQLRDAYHNCFNRWYAEKFMKGHWDKQECVSEWQKYRACLSEHLEDKHLIRFLQADGVVQDSGVASQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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