Glyma06g05640 - SoyBase

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Report for Sequence Feature Glyma06g05640

Feature Type:	gene_model
Chromosome:	Gm06
Start:	4033776
stop:	4037515
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33100	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/apoptosis (InterPro:IPR007918); Has 214 Blast hits to 214 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). \| chr4:15971701-15972342 FORWARD LENGTH=92	SoyBase	E_val: 7.00E-33	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3481	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21329	Panther	N-ACETYLGLUCOSAMINYL TRANSFERASE COMPONENT GPI1-RELATED	JGI		ISS
PTHR21329:SF9	Panther	OS09G0361700 PROTEIN	JGI		ISS
PF02297	PFAM	Cytochrome oxidase c subunit VIb	JGI		ISS
PF05254	PFAM	Uncharacterised protein family (UPF0203)	JGI		ISS
UniRef100_C6SXG6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXG6_SOYBN	SoyBase	E_val: 3.00E-55	ISS
UniRef100_I3XLL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2C n=1 Tax=Cucumis sativus RepID=I3XLL9_CUCSA	SoyBase	E_val: 3.00E-28	ISS

Expression Patterns of Glyma06g05640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g05640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g053600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g05640

Limit To All Plant Sequences

>Glyma06g05640.4   sequence type=transcript   gene model=Glyma06g05640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTCGGATTGCTTCCTATAGAAAGTAAAAATGAATAAATTTTGAATGGGAAAATGTTGACAAGAATTTAAATTTCTAAAATCTAAAATAAACATAATGATGTAGTCCTACTACAGTTTCCATGGATCAACTACACTTGGTTGACACTTGGCAGGTTTAATTTGAAAGCTCCGTTGCTAGACGATCACGGTTGACGCCAATTGCTCCCTCCCTCCATGAGATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTGAACATTTGGAAGATAAGCATCTGATTCGTTTCTTACAAGCTGACGGCGTTGTTCAAGACAGTGGTGTTGCTTCTCAGTAACTTGTAGGGAGTAAGGTAACTAACTACGAAGCTTATTCATGTGACGACCACTGTTGATGTGGTATTTGAAGTTACGCTGCCTGTACGTTGTATCTTTGTTTGAACAGTGCAAGCTTTGTATTTCCGTCAGAAATCTTGGTGGTTTTAAATCATGGTCTATTGCAATGGGTTGAAATGAACATTTGGTGAGGGTGAATTATGGTAACTTGGCAAGTGACAATTTTTTAATGCCATCTTTCAAGAAATTCTAAAGGAGAGGGGAATGTTTAACTAATCCGCCAGTGAAGAGATTTCCAGGACGAAGGTGAAGTTTAAACGTCCTCTCTAAAAAACAAAGGTTTAATTAGTCTGGGGTCTCTAAACTCTTACAAATTTACAAATAAGTCCCTGATTTTTTTTCGAAGTGGGTCCTGAACTTTTTTTTAATACAGTTTTGAAATCAAATTTATATGCCTAGTCGTTGAATGTCGCACGCGATCACTGTAAATCTAGGGGTATTTGTGTAATTTCACAAAATTTTAGGGGGTGATTAGTGTTTTTTTACCCTTTTTCTTTACCACCGCATCTATTTGTAAAAACATTGTGCTAGTAAAATTTACAAAAGGAGTCAATTAACGGT

Coding sequences of Glyma06g05640

Limit To All Plant Sequences

>Glyma06g05640.3   sequence type=CDS   gene model=Glyma06g05640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTGAACATTTGGAAGATAAGCATCTGATTCGTTTCTTACAAGCTGACGGCGTTGTTCAAGACAGTGGTGTTGCTTCTCAGTAA

>Glyma06g05640.4   sequence type=CDS   gene model=Glyma06g05640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAGAGAAGAAAGCCTCCAAAACTTCATCTTCAACCTCTCCATGTGCTCAACTTCGCGACGCATACCACAATTGCTTCAACAGGTGGTACGCCGAGAAATTCATGAAGGGTCACTGGGACAAACAAGAATGCGTTTCCGAGTGGCAAAAATACAGAGCCTGTCTTTCTGAACATTTGGAAGATAAGCATCTGATTCGTTTCTTACAAGCTGACGGCGTTGTTCAAGACAGTGGTGTTGCTTCTCAGTAA

Predicted protein sequences of Glyma06g05640

Limit To All Plant Sequences

>Glyma06g05640.3   sequence type=predicted peptide   gene model=Glyma06g05640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREKKASKTSSSTSPCAQLRDAYHNCFNRWYAEKFMKGHWDKQECVSEWQKYRACLSEHLEDKHLIRFLQADGVVQDSGVASQ*

>Glyma06g05640.4   sequence type=predicted peptide   gene model=Glyma06g05640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MREKKASKTSSSTSPCAQLRDAYHNCFNRWYAEKFMKGHWDKQECVSEWQKYRACLSEHLEDKHLIRFLQADGVVQDSGVASQ*

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