Report for Sequence Feature Glyma06g05570
Feature Type: gene_model
Chromosome: Gm06
Start: 3984251
stop: 3989036
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g05570
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G11960 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF803) | chr5:3858852-3861462 REVERSE LENGTH=344
SoyBase E_val: 5.00E-169 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2922
KOG
Uncharacterized conserved protein
JGI ISS
PF05653 PFAM
Protein of unknown function (DUF803)
JGI ISS
UniRef100_I1K8D9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8D9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g05570
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g05570
Paralog Evidence Comments
Glyma04g05560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g05570 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g053100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g05570
Coding sequences of Glyma06g05570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g05570.1 sequence type=CDS gene model=Glyma06g05570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGGGAATCAATTGTTTTGACGGTGGTTGCCACTGCCGGCAACAACATCGGCAAAATCCTTCAGAAGAAGGGCACTGTCATTCTTCCCCCTCTCTCTTTCAAGCTCAAGGTCATAAGGGCATATGCTTTGAACAAAACCTGGCTCATAGGTTTTGTAATGGATATATTTGGGGCACTGTTGATGTTAAGGGCATTAGCTCTTGCTCCTGTCTCCGTCATCCAACCAGTTTCTGGCTGTGGATTGGCAATTCTCTCAGTCTTTTCTCATTTTTATCTCAAGGAAGTTATGAATATTGTTGATTGGGTGGGCATTACCTTGGCAGGTTTTGGCACAATAGGAGTTGGTGCTGGAGGTGAGGAGCAAGAGGCTGCTGCTCTATCTATATTTCACATACCGTGGCTGGCATTTGTTGTTTTCATCTTGTTTATAATGCTTAATGGATGGCTTCGCATATTCAAACGCAATCGAAGAGAACAAGAGATGATGGAATATGATGTTGTTGAGGAAATTATTTACGGCTTAGAATCTGGAATTTTGTTTGGGATGGCATCTGTAATATCAAAGATGGGGTTTCTGTTCTTGGAGCAAGGCTTCCCCAAGCTGTTGGTTCCTATTTGCATCATCATAAGTGTCTGTTCAAGTGGTACAGGCTTTTACTACCAGACACGTGGTCTAAAACATGGGCGGGCTATTGTAGTTTCTACATGTGCCGCAGTGGCATCAATTTTGACTGGTGTACTTGCTGGGATGCTTGCTTTGGGTGAGCGACTCCCTTCGGCCCCAAAAGCTCGCTTGTTACTTCTTCTTGGATGGCTACTTATAATTGTTGGCGTGATTTTACTTGTTGGTTCTACAAAGCTAGTGAGATTCTTTCGATTTTCTTCACACCGCTTTAAGAATTATGGCCCTAGAAGATCTGGAACTTCCCGTGTTAGGGAACCTAGCCCAACTGCTGTCATTCAAGCAGCGACCTTAAATCATTTACTCTCATCATCTTCCAAAGAAAAAGCTTGA
Predicted protein sequences of Glyma06g05570
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g05570.1 sequence type=predicted peptide gene model=Glyma06g05570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MWESIVLTVVATAGNNIGKILQKKGTVILPPLSFKLKVIRAYALNKTWLIGFVMDIFGALLMLRALALAPVSVIQPVSGCGLAILSVFSHFYLKEVMNIVDWVGITLAGFGTIGVGAGGEEQEAAALSIFHIPWLAFVVFILFIMLNGWLRIFKRNRREQEMMEYDVVEEIIYGLESGILFGMASVISKMGFLFLEQGFPKLLVPICIIISVCSSGTGFYYQTRGLKHGRAIVVSTCAAVASILTGVLAGMLALGERLPSAPKARLLLLLGWLLIIVGVILLVGSTKLVRFFRFSSHRFKNYGPRRSGTSRVREPSPTAVIQAATLNHLLSSSSKEKA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
