Glyma06g05550 - SoyBase

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Report for Sequence Feature Glyma06g05550

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3963335
stop:	3968619
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14560	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein \| chr1:4981300-4983082 FORWARD LENGTH=331	SoyBase	E_val: 2.00E-147	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006839	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005743	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG0752	KOG	Mitochondrial solute carrier protein	JGI		ISS
PTHR24089	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24089:SF104	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00153	PFAM	Mitochondrial carrier protein	JGI		ISS
UniRef100_G7J7P6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial substrate carrier family protein B n=1 Tax=Medicago truncatula RepID=G7J7P6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K8D7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8D7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05550

Paralog	Evidence	Comments
Glyma04g05530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g052900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05550

Limit To All Plant Sequences

>Glyma06g05550.1   sequence type=CDS   gene model=Glyma06g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTTCACAAGGGTCTACCATTGCTGGTTTCGTGGACAATGCATCCATTAAGAGAAATGAGTCTAGTTTTGATGGCGTTCCCGTGTATGTTAAGGAACTAATTGCCGGAGGCTTTGCTGGTGCGCTTTCTAAGACCTCTGTTGCACCCCTCGAACGGGTTAAGATACTTTGGCAGACAAGGACACCAGGATTTCATTCTCTTGGGGTGTATCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCGTATGCAGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAATAATTATCCTGTGTTAGGTACAGGTCCTTTTATTGATCTTTTAGCAGGCTCTGCTGCAGGAGGAACTTCAGTTTTATGTACCTACCCCTTGGATCTTGCTCGTACCAAACTTGCTTACCAGGTGGCTGACACAAGAGGACTTATCAAAGATGGTATGAAAGGAGTTCAACCTGCACATAATGGCATTAAAGGCGTGCTTACAAGTGTCTATAAGGAAGGGGGAGTTCGTGGACTTTATAGGGGTGCAGGACCAACCCTTACTGGAATTCTTCCATATGCTGGTTTAAAGTTCTACATGTATGAGAAATTGAAGACTCATGTTCCTGAAGAACATCAAAAGTCCATTATGATGCGTCTTTCTTGTGGAGCTCTAGCTGGATTGTTTGGGCAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGGTTGGCAGCCTGCAAAATGCTGCCCATGAGGATGTCAGATACAAAAATACAATTGATGGACTTAGGACTATTGTTTGTAATCAAGGATGGAAGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGATTGTTCCTTCAGCTGCAATTAGTTTCACCACATACGACATGGTGAAGTCTTGGCTTGGCATACCACCTCAACAAAAGTCTCAATCAGTTTCGGCAGCATGA

Predicted protein sequences of Glyma06g05550

Limit To All Plant Sequences

>Glyma06g05550.1   sequence type=predicted peptide   gene model=Glyma06g05550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSSQGSTIAGFVDNASIKRNESSFDGVPVYVKELIAGGFAGALSKTSVAPLERVKILWQTRTPGFHSLGVYQSMNKLLKHEGFLGLYKGNGASVIRIVPYAALHFMTYERYKSWILNNYPVLGTGPFIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVADTRGLIKDGMKGVQPAHNGIKGVLTSVYKEGGVRGLYRGAGPTLTGILPYAGLKFYMYEKLKTHVPEEHQKSIMMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNAAHEDVRYKNTIDGLRTIVCNQGWKQLFHGVSINYIRIVPSAAISFTTYDMVKSWLGIPPQQKSQSVSAA*

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