Glyma06g05475 - SoyBase

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Report for Sequence Feature Glyma06g05475

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3899939
stop:	3900542
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05475

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_UPI000233A7DE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A7DE related cluster n=1 Tax=unknown RepID=UPI000233A7DE	SoyBase	E_val: 2.00E-34	ISS

Expression Patterns of Glyma06g05475

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g05475 not represented in the dataset	Glyma06g05475 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05475

Paralog	Evidence	Comments
Glyma04g05440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05475 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g052200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05475

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05475

Limit To All Plant Sequences

>Glyma06g05475.1   sequence type=CDS   gene model=Glyma06g05475   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGAATGCTTCCTCCACCGAAGCTCTCACCAGAAAGCTGGACGAGATTCTGACCGAGACGGAGAATGATGCCGGACAATTCTGTTTCAAAGAAGAAACGGTAGAAAAGTTCATGCAAGAGCTTTACAAAGAGATCATCGCATCCCCACCAACGCCGTCAAATGCGGTGCAGGTGCAAAATGACTCTGTGGGGCTTCAAGTTGTTATCGGTGAAGACAAGACAGATGAAGGGCATTTCGACGAGGATGACTGGCTTGCAAGGGTGCTTCGTTGGGGTCAGATTAAAACGCGTAAACGTTATTTCTAG

Predicted protein sequences of Glyma06g05475

Limit To All Plant Sequences

>Glyma06g05475.1   sequence type=predicted peptide   gene model=Glyma06g05475   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEENASSTEALTRKLDEILTETENDAGQFCFKEETVEKFMQELYKEIIASPPTPSNAVQVQNDSVGLQVVIGEDKTDEGHFDEDDWLARVLRWGQIKTRKRYF*

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