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Report for Sequence Feature Glyma06g05460

Feature Type:gene_model
Chromosome:Gm06
Start:3877099
stop:3881654
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g05460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60960AT Annotation by Michelle Graham. TAIR10: iron regulated transporter 3 | chr1:22445410-22447060 REVERSE LENGTH=425 SoyBaseE_val: 1.00E-177ISS
GO:0006812GO-bp Annotation by Michelle Graham. GO Biological Process: cation transport SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0006829GO-bp Annotation by Michelle Graham. GO Biological Process: zinc ion transport SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0071577GO-bp Annotation by Michelle Graham. GO Biological Process: zinc ion transmembrane transport SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0005381GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion transmembrane transporter activity SoyBaseN/AISS
GO:0005385GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion transmembrane transporter activity SoyBaseN/AISS
GO:0008324GO-mf Annotation by Michelle Graham. GO Molecular Function: cation transmembrane transporter activity SoyBaseN/AISS
GO:0046873GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity SoyBaseN/AISS
KOG1558 KOG Fe2+/Zn2+ regulated transporter JGI ISS
PTHR11040Panther ZINC-IRON TRANSPORTER JGI ISS
PTHR11040:SF1Panther ZINC/IRON TRANSPORTER JGI ISS
PF02535PFAM ZIP Zinc transporter JGI ISS
UniRef100_G7J7M9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome c oxidase subunit n=1 Tax=Medicago truncatula RepID=G7J7M9_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K8C8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K8C8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g05460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05460
ParalogEvidenceComments
Glyma04g05410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g052000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g05460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g05460
>Glyma06g05460.4   sequence type=CDS   gene model=Glyma06g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATTCCTAGCATTCATCACCTCCAAATCCCAATTCCCAATCCTCTTCACTTTATTAATCGATTCTAGTTTCTCTCCTCATCCTACAACCACAACAAGCCTCCCCCCTCTTTTCCCCCAACAATTTTGTCTCACTCCCATGATTTTTACCGAGGATCTCTGGCCACTGCTCCAGCAACTCGTTGGAAAAACTCCTCTCTTCTCATCTTCATCATCAGAAGCTTCGTCGTCCTTCTTCCAGAACCTTCGGGAATCGATGACGAACTCAAGTTGCGGAGGCGCGGAGTTGGAGCTATGCCGAGATGAATCAGCCGCATTGGTTCTCAAGTTCGTCGCCATCGCTTCCATTCTCCTCTCCGGCATGGCCGGGATCGCCATCCCGCTCATCGGAAAACACCGCCGCTTCCTCCGCACCGACGGCAACCTCTTCGTCGCTGCCAAGGCCTTCGCCGCCGGCGTCATTCTCGCCACCGGATTCGTGCACATGCTCTCCGACGCCACCAAGGCACTTCGCCACCCGTGCCTGCCAGCGTTCCCGTGGTCCAAGTTTCCCTTCACCGGTTTCTTCGCCATGTTGGCCGCGCTCCTCACGCTCCTCCTAGATTTCGTGGGAACGCAATACTACGAGCGCAAGCAGGGGATGAACCGCGCCCCCTCCGAAGAACCAGTACGGGTCGGCTCATCCGAACCCGGTGGGAATGGGAAGGTGTTTGGGGAAGAAGAAAGCGGCGGAATGCACATCGTGGGGATGCATGCACATGCTGCACATCATAGACATAACCATCCTCATGGCAATGATGCATGTCATGGCATTGGCAACATCAAGGAACAGGTCCACGCCCACTCCCACTCCCACTCCCACTCCCACGGACACTCCCACTCCCACATCGAAGATGGAGAAGATACTGACGTTCGACACGTCGTCGTTTCTCAGGTGTTGGAGCTTGGGATTGTATCACATTCTGTTATAATTGGGTTGTCCTTAGGAGTTTCGCAAAGTCCTTGTACCATAAGGCCATTAATTGCGGCGTTATCTTTTCATCAGTTTTTTGAAGGGTTTGCGCTTGGAGGTTGCATTTCCCAAGCGCAGTTTAAAGCCTCGTCAGCAACTATAATGGCTTGTTTTTTTGCACTGACTACACCCTTGGGTGTTGGGATTGGAATGGCTATCTCTTCGGGGTATAACCCTTACAGCCCCGGTGCACTCATCGCCGAAGGTATCTTGGATTCCTTGTCGTCGGGGATTTTGGTTTATATGGCTTTGGTAGATTTGATCGCTGCGGATTTTCTTAGCAAGAGGATGAGTTGTAACTTTAGGCTGCAGATACTGTCTTACTGCATGCTTTTCCTTGGGGCTGGATTGATGTCTTCGCTCGCAATTTGGGCATGA
Predicted protein sequences of Glyma06g05460
>Glyma06g05460.4   sequence type=predicted peptide   gene model=Glyma06g05460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPFLAFITSKSQFPILFTLLIDSSFSPHPTTTTSLPPLFPQQFCLTPMIFTEDLWPLLQQLVGKTPLFSSSSSEASSSFFQNLRESMTNSSCGGAELELCRDESAALVLKFVAIASILLSGMAGIAIPLIGKHRRFLRTDGNLFVAAKAFAAGVILATGFVHMLSDATKALRHPCLPAFPWSKFPFTGFFAMLAALLTLLLDFVGTQYYERKQGMNRAPSEEPVRVGSSEPGGNGKVFGEEESGGMHIVGMHAHAAHHRHNHPHGNDACHGIGNIKEQVHAHSHSHSHSHGHSHSHIEDGEDTDVRHVVVSQVLELGIVSHSVIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFKASSATIMACFFALTTPLGVGIGMAISSGYNPYSPGALIAEGILDSLSSGILVYMALVDLIAADFLSKRMSCNFRLQILSYCMLFLGAGLMSSLAIWA*






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