Glyma06g05450 - SoyBase

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Report for Sequence Feature Glyma06g05450

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3874522
stop:	3876384
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G56840	AT	Annotation by Michelle Graham. TAIR10: myb-like transcription factor family protein \| chr5:22980789-22982152 FORWARD LENGTH=233	SoyBase	E_val: 1.00E-40	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR12374	Panther	TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7J7M5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MYB transcription factor n=1 Tax=Medicago truncatula RepID=G7J7M5_MEDTR	SoyBase	E_val: 4.00E-68	ISS
UniRef100_I1K8C5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K8C5_SOYBN	SoyBase	E_val: 1.00E-126	ISS

Expression Patterns of Glyma06g05450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05450

Paralog	Evidence	Comments
Glyma04g05390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g051900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g05450

Limit To All Plant Sequences

>Glyma06g05450.3   sequence type=transcript   gene model=Glyma06g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGATCCCCGCATGCCTAATGTGCCACTTGAAAAGGTGGCTTGATTATGTATTAATTAAGGATAAGCTTTTTATAAGTTTATCCAATTATAGTTGAAAGAGAGTACTTGGGGTTTCTTTCTGTTTTTGGTTTCAACTGCAAAACCTTGGGTTGGAAAGTGTCCCAAAAGAAAAACTATGTTCTCTAATATAATTCCACTTTTTTTACTCCAATGCACACTTCCACTTTGCACATCAACAATAGCGCCACCAAAGACCGCACATTACAAAAATGTCACAATGCAAGGACTTGTAAAAGTACTCCCGGTCAAGGACAACTAAAGCTCTTCGGAGTGCAACTAGATGTTTCTTCTTCTTCATCATCCTCGAATTCTTTTTCATCATCATCACCTTCATATTCTGGCATGAAAAGAAGTTTTAGCACGAATTACTTGTTGTCTTCATGGGCATCTTCATCTGTACCCTCCTCCTTTTCCTCGCCTTCCCTGCTTGGTGCAAATGAAAATTCAGATAGTTACTTACTCAATGCCAATAGCCTCATATCAACAATTCAAGACACAAAAAAAGGTGTCCCGTGGACAGAGGAGGAGCATCGGATATTTCTTATAGGGCTTGAGAAGCTGGGGAAGGGAAACTGGAGAGGCATATCTAAAAGTTTTGTGACAACAAGAACACCTACCCAAGTGGCTAGTCATGCACAAAAATATTTTCTCCGTCAATCTCAGAATAGCTTCAATAAAAGAAAACACCGCCCTAGTCCCAACCTGTTCGATAATTGGCTTTCGCATCGTCCTCATTCATTGCTGAACTGGGTTACCACTTTAACTTCAACTAATAATTGCACTGTTCAGAGCGCGAGCCCAGATTTAGAACTCAAACTTGCAACTCCCACGCCATTGGAGCTATCAGTAGCAGATGCATAGAATGTGTGATATTTGACTTCTAGCCAGCAATCAGCATGTTTTACTTTTTGTTACTTCAAAATTATGTATATTTTCCTGGCACTGAATGTAGTATTATATATATTTATCTTTATTTTTCACTTATACCTACTTAAAGAAGAAATTTTTGTTTCCCCAATTAATCTCTTTGTACACAAGACAAAAGACGCGACCGGAAATGAAAGATAATGACTAT

Coding sequences of Glyma06g05450

Limit To All Plant Sequences

>Glyma06g05450.2   sequence type=CDS   gene model=Glyma06g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAGGCATATTCTTAATTTGTCTCGTTGAGAATATGGGAATAGCAAGGAAATGTTCATATTGTGGTAACTTAGGTCACAATGCAAGGACTTGTAAAAGTACTCCCGGTCAAGGACAACTAAAGCTCTTCGGAGTGCAACTAGATGTTTCTTCTTCTTCATCATCCTCGAATTCTTTTTCATCATCATCACCTTCATATTCTGGCATGAAAAGAAGTTTTAGCACGAATTACTTGTTGTCTTCATGGGCATCTTCATCTGTACCCTCCTCCTTTTCCTCGCCTTCCCTGCTTGGTGCAAATGAAAATTCAGATAGTTACTTACTCAATGCCAATAGCCTCATATCAACAATTCAAGACACAAAAAAAGGTGTCCCGTGGACAGAGGAGGAGCATCGGATATTTCTTATAGGGCTTGAGAAGCTGGGGAAGGGAAACTGGAGAGGCATATCTAAAAGTTTTGTGACAACAAGAACACCTACCCAAGTGGCTAGTCATGCACAAAAATATTTTCTCCGTCAATCTCAGAATAGCTTCAATAAAAGAAAACACCGCCCTAGTCCCAACCTGTTCGATAATTGGCTTTCGCATCGTCCTCATTCATTGCTGAACTGGGTTACCACTTTAACTTCAACTAATAATTGCACTGTTCAGAGCGCGAGCCCAGATTTAGAACTCAAACTTGCAACTCCCACGCCATTGGAGCTATCAGTAGCAGATGCATAG

>Glyma06g05450.3   sequence type=CDS   gene model=Glyma06g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACACTTCCACTTTGCACATCAACAATAGCGCCACCAAAGACCGCACATTACAAAAATGTCACAATGCAAGGACTTGTAAAAGTACTCCCGGTCAAGGACAACTAAAGCTCTTCGGAGTGCAACTAGATGTTTCTTCTTCTTCATCATCCTCGAATTCTTTTTCATCATCATCACCTTCATATTCTGGCATGAAAAGAAGTTTTAGCACGAATTACTTGTTGTCTTCATGGGCATCTTCATCTGTACCCTCCTCCTTTTCCTCGCCTTCCCTGCTTGGTGCAAATGAAAATTCAGATAGTTACTTACTCAATGCCAATAGCCTCATATCAACAATTCAAGACACAAAAAAAGGTGTCCCGTGGACAGAGGAGGAGCATCGGATATTTCTTATAGGGCTTGAGAAGCTGGGGAAGGGAAACTGGAGAGGCATATCTAAAAGTTTTGTGACAACAAGAACACCTACCCAAGTGGCTAGTCATGCACAAAAATATTTTCTCCGTCAATCTCAGAATAGCTTCAATAAAAGAAAACACCGCCCTAGTCCCAACCTGTTCGATAATTGGCTTTCGCATCGTCCTCATTCATTGCTGAACTGGGTTACCACTTTAACTTCAACTAATAATTGCACTGTTCAGAGCGCGAGCCCAGATTTAGAACTCAAACTTGCAACTCCCACGCCATTGGAGCTATCAGTAGCAGATGCATAG

Predicted protein sequences of Glyma06g05450

Limit To All Plant Sequences

>Glyma06g05450.2   sequence type=predicted peptide   gene model=Glyma06g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRGIFLICLVENMGIARKCSYCGNLGHNARTCKSTPGQGQLKLFGVQLDVSSSSSSSNSFSSSSPSYSGMKRSFSTNYLLSSWASSSVPSSFSSPSLLGANENSDSYLLNANSLISTIQDTKKGVPWTEEEHRIFLIGLEKLGKGNWRGISKSFVTTRTPTQVASHAQKYFLRQSQNSFNKRKHRPSPNLFDNWLSHRPHSLLNWVTTLTSTNNCTVQSASPDLELKLATPTPLELSVADA*

>Glyma06g05450.3   sequence type=predicted peptide   gene model=Glyma06g05450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHTSTLHINNSATKDRTLQKCHNARTCKSTPGQGQLKLFGVQLDVSSSSSSSNSFSSSSPSYSGMKRSFSTNYLLSSWASSSVPSSFSSPSLLGANENSDSYLLNANSLISTIQDTKKGVPWTEEEHRIFLIGLEKLGKGNWRGISKSFVTTRTPTQVASHAQKYFLRQSQNSFNKRKHRPSPNLFDNWLSHRPHSLLNWVTTLTSTNNCTVQSASPDLELKLATPTPLELSVADA*

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