Glyma06g05400 - SoyBase

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Report for Sequence Feature Glyma06g05400

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3845274
stop:	3850191
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25970	AT	Annotation by Michelle Graham. TAIR10: KH domain-containing protein \| chr2:11071844-11075604 REVERSE LENGTH=632	SoyBase	E_val: 4.00E-131	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG1676	KOG	K-homology type RNA binding proteins	JGI		ISS
PTHR10288	Panther	RNA-BINDING PROTEIN RELATED	JGI		ISS
PTHR10288:SF53	Panther	KH DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00013	PFAM	KH domain	JGI		ISS
UniRef100_G7J7L9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Far upstream element-binding protein n=1 Tax=Medicago truncatula RepID=G7J7L9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0001B63B87	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001B63B87 related cluster n=1 Tax=unknown RepID=UPI0001B63B87	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05400

Paralog	Evidence	Comments
Glyma04g05330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g051200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05400

Limit To All Plant Sequences

>Glyma06g05400.1   sequence type=CDS   gene model=Glyma06g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGGAAGCACAGTACTCATCGGGACCCGATTCCGCGCCCCTCAAGCGCAAGTACGAAGACCAACCCTCCGGCATCGAGCTTGCCAAGCAGCGTGCTCAGGAAGTCGCCGCACGCCTCCTCAACGCCGCTCCTCCTCCGCCACTCGACGCCAAGCGTCCCAAACCCGACACCGGCTTCGATTCTCTCGATTTGAAGCCTCTGTATTCCGCATCTCCTCCTCCCGTCTCCTACGGTCACCAAGGTTCCAGCAAGAAGATTGATATCCCTAATGGCAGGGTTGGTGTGATTATTGGTAAAGGCGGAGAGACTATTAAGTATCTCCAGTTGCAGTCTGGTGCCAAAATTCAAATTACTCGTGATATTGATGCGGACCCTAATTCTTCCACTAGGACGGTTGAGCTTATGGGCACTCCTGAAGCAATTTCCTCTGCCGAGAAACTCATCAATGAAGTTCTTGCTGAGGCTGAATCTGGGGGTTCTGGCATTGTTACTCGAAGATTCACGGGACAAGCTGGGTCGGATGAATTTGTCATGAAAATCCCAAATAATAAGGTTGGCCTTATAATTGGCAAAGGTGGAGAAACTATAAAGAATATGCAAGCTTCTACTGGAGCACGGATTCAGGTGATACCTCTGCATCTTCCCCCGGGTGACACATCAACTGAAAGAACATTAAAAATTGATGGTACTCCTGAGCAAATTGAGTCTGCAAAGCAGTTGGTTTATCAAGTCATCAGTGGCGAGAATCGTGTTAGAAATCCAGCAATGTCTGGTGGTTATCCTCAACAAGGTTACCAATCTCGACCACCATCTAACTGGGCTCCCCCTGCTCCAACGCAGCAACCTGGTTATGGCTACGTGCAACCTGGAGCATACTCTGGTCCATCACCCCAGTATAACATGCCTCAGCAACCATATGCAGGCTATCCTCCCCAGCAACCTGATGGATATTCCACCAATTGGGATCAGTCTACTGCACCACCTCACCAACAGTCTACTCATGGTGGTGGTTATTATTACTATAGTCAACAGCCACAGCAACCACAAAATCCTGGGGGTCCTGCCCCTCCAGCTGATGGCTCTGCATACAATTACAGTCAGCCACCTTCCTCTGGTTATAACCAATCAGCACAGCAGGGTTATGCACAGGACAGCTATAATGCATATAATGCGCAATCACAATCAGGGTATGGGCAGCCACCTACATATGATCAGCAGCAAGGCTATGGTAGTGAAAGCAACCCGGCACAAGAGGGCCACACTGCAAACTATGCAGTACAGGGAGATTCAGCCCAAGCTCCTTCTGCCCAACCAATTACCGTAGCGCAGCAAGGTTATCCTACCAACCAACTGCCCAGTTCAAACACTGCCAACTACCCACCTCAAGGAACTCCTCAGCCAGGTTATGGGGTTCCCCCTACATCCCAAGCAGCTTATGGCAATCAATCACAGCCTGGTTATGGTGGTGCAGTGCAACCAGGGTACGGTCCTCAAACATATGGTGCTCCGCAGGGTGGCCAGCCTGGTTATGGTCAGGCGCTGCCTTCATACAGCAACAGTTCTTATGGTGCTGGTTATACACAGACTCCGGCGTATACCGGTGATGGTAATGGGAATGCTCAGGCACCCCAGAGTGCCATTGCTAAAGCATCCCCTTGA

Predicted protein sequences of Glyma06g05400

Limit To All Plant Sequences

>Glyma06g05400.1   sequence type=predicted peptide   gene model=Glyma06g05400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEAQYSSGPDSAPLKRKYEDQPSGIELAKQRAQEVAARLLNAAPPPPLDAKRPKPDTGFDSLDLKPLYSASPPPVSYGHQGSSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQITRDIDADPNSSTRTVELMGTPEAISSAEKLINEVLAEAESGGSGIVTRRFTGQAGSDEFVMKIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKQLVYQVISGENRVRNPAMSGGYPQQGYQSRPPSNWAPPAPTQQPGYGYVQPGAYSGPSPQYNMPQQPYAGYPPQQPDGYSTNWDQSTAPPHQQSTHGGGYYYYSQQPQQPQNPGGPAPPADGSAYNYSQPPSSGYNQSAQQGYAQDSYNAYNAQSQSGYGQPPTYDQQQGYGSESNPAQEGHTANYAVQGDSAQAPSAQPITVAQQGYPTNQLPSSNTANYPPQGTPQPGYGVPPTSQAAYGNQSQPGYGGAVQPGYGPQTYGAPQGGQPGYGQALPSYSNSSYGAGYTQTPAYTGDGNGNAQAPQSAIAKASP*

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