Report for Sequence Feature Glyma06g05390
Feature Type: gene_model
Chromosome: Gm06
Start: 3840400
stop: 3844816
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g05390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G26030 AT
Annotation by Michelle Graham. TAIR10: ferrochelatase 1 | chr5:9096675-9098752 FORWARD LENGTH=466
SoyBase E_val: 0 ISS
GO:0006612 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane
SoyBase N/A ISS
GO:0006783 GO-bp
Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process
SoyBase N/A ISS
GO:0006979 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to oxidative stress
SoyBase N/A ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0010363 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response
SoyBase N/A ISS
GO:0019243 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate
SoyBase N/A ISS
GO:0030968 GO-bp
Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response
SoyBase N/A ISS
GO:0033014 GO-bp
Annotation by Michelle Graham. GO Biological Process: tetrapyrrole biosynthetic process
SoyBase N/A ISS
GO:0043069 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death
SoyBase N/A ISS
GO:0052542 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009536 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid
SoyBase N/A ISS
GO:0004325 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ferrochelatase activity
SoyBase N/A ISS
KOG1321
KOG
Protoheme ferro-lyase (ferrochelatase)
JGI ISS
PTHR11108 Panther
FERROCHELATASE
JGI ISS
PF00762 PFAM
Ferrochelatase
JGI ISS
UniRef100_I1K8C0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ferrochelatase n=1 Tax=Glycine max RepID=I1K8C0_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1K8C0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Ferrochelatase n=1 Tax=Glycine max RepID=I1K8C0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g05390
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g05390
Paralog Evidence Comments
Glyma04g05320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g05390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g051100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g05390
Coding sequences of Glyma06g05390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g05390.1 sequence type=CDS gene model=Glyma06g05390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACGCAACCTTATACTCTGCTGCTTTTCCTACCACGTTTCGCAGTCTCGATCATCGCAATTTCTCAGCGTTATGTTCGGATATCCAAAATCCTGGCTATGTTGATTACCATTCAAATTCTAATAAGTCTACATCTCAAGCGTCTTTGTTTTTGCGTTCTGATTCCACCAATAGAAGCAATGTCGTGCTTGGTGGAGCACTTTGTGTGAACCCCTCTGGCAGGAGAAACCTAGTTGGTCCGGCTTCTTATTCTGTAGAGACGAGTGCTTATGATGTGGCTTCTTTAGAATCTCCTTCCCATGTCGCTGAAGAAAAAGTTGGTGTGCTGCTTCTCAATCTAGGAGGACCAGAGACATTGAATGACGTTCAACCTTTTCTGTTTAATCTTTTTGCAGATCCTGATATCATTCGTCTTCCAAGGTTGTTTCGGTTTCTCCAGCGACCATTGGCAAAATTGATTTCTGTACTTCGGTCTCCTAAATCCAAGGAAGGGTATGCTGCTATTGGTGGTGGCTCTCCTTTACGCAAAATTACAGATGACCAGGCACTCGCAATTAAAATGGCTTTGGAAGCAAAGGGCATCTCTTCAAATGTCTATGTTGGGATGCGGTACTGGTACCCATTTACTGAAGAAGCAATTCAACAAATTAAGAGGGACAGAATAACAAGGCTTGTGGTACTACCCCTTTATCCCCAGTTTTCTATATCCACAACTGGTTCAAGCATCCGCATTCTTGAGCATATATTCAGGGAAGATGCCTATTTGTCCAAGCTTCCTGTTTCCATTATAAACTCTTGGTATCAACGAGAAGGTTATATTAAGTCAATGGGTAACTTAATTCAGAAAGAGCTTCAGAGTTTTTCTGAACCAAAAGAGGTAATGATATTTTTCAGTGCCCACGGTGTACCTGTCAGTTACGTTGAGGATGCTGGGGATCCATACCGAGACCAAATGGAGGAGTGCATCTTCTTGATCATGCAAGAGTTGAAAGCTCGAGGAATTAGTAATGAGCACACTCTTGCTTATCAGAGTCGAGTGGGTCCTGTACAGTGGCTGAAACCATATACAGATGAAGTTCTCGTTGAGCTTGGCCAAAAAGGTGTGAAGAGTCTTTTAGCTGTTCCAGTGAGTTTTGTGAGTGAGCATATTGAAACCCTTGAAGAAATTGACATGGAGTACAAGGAATTGGCTATTGAATCTGGCATCAAGAATTGGGCACGTGTACCTGCCCTTGGTGTTACCCCTTCCTTCATTACAGATTTGGCAGATGCAGTAATAGAAGCTCTCCCGTCAGCAACAGCAATGTATGCACCAACCAGCATCTCTGAAGATGTTGATCATGACCCAGTTAGTTATTTTATCAAGATATTCTGTGGTTCAATCTTGGCATTCATCTTGTTCTTGTCACCCAAAATGATCATGGCATTCAGGAATCAAGTCATTTAG
Predicted protein sequences of Glyma06g05390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g05390.1 sequence type=predicted peptide gene model=Glyma06g05390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNATLYSAAFPTTFRSLDHRNFSALCSDIQNPGYVDYHSNSNKSTSQASLFLRSDSTNRSNVVLGGALCVNPSGRRNLVGPASYSVETSAYDVASLESPSHVAEEKVGVLLLNLGGPETLNDVQPFLFNLFADPDIIRLPRLFRFLQRPLAKLISVLRSPKSKEGYAAIGGGSPLRKITDDQALAIKMALEAKGISSNVYVGMRYWYPFTEEAIQQIKRDRITRLVVLPLYPQFSISTTGSSIRILEHIFREDAYLSKLPVSIINSWYQREGYIKSMGNLIQKELQSFSEPKEVMIFFSAHGVPVSYVEDAGDPYRDQMEECIFLIMQELKARGISNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGVKSLLAVPVSFVSEHIETLEEIDMEYKELAIESGIKNWARVPALGVTPSFITDLADAVIEALPSATAMYAPTSISEDVDHDPVSYFIKIFCGSILAFILFLSPKMIMAFRNQVI*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
