Glyma06g05360 - SoyBase

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Report for Sequence Feature Glyma06g05360

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3823865
stop:	3829735
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20430	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). \| chr3:7121480-7123074 FORWARD LENGTH=265	SoyBase	E_val: 1.00E-66	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3948	KOG	Mediator of U snRNA nuclear export PHAX	JGI		ISS
PTHR13135	Panther	CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26	JGI		ISS
PF10258	PFAM	PHAX RNA-binding domain	JGI		ISS
UniRef100_G7JMS7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase n=1 Tax=Medicago truncatula RepID=G7JMS7_MEDTR	SoyBase	E_val: 3.00E-74	ISS
UniRef100_I1K8B7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8B7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g05360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g050800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g05360

Limit To All Plant Sequences

>Glyma06g05360.3   sequence type=transcript   gene model=Glyma06g05360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTCAATTTCATTTCTCCATTGTTTTGTGTGTGTATCCTTCGTGCAATCGTGCTTGCCTTTGGTTTAAATTCAATTAGTTTTCTTAATTTCTCTATGGAAATAAATGCATACAGCGTTAGGGTTTGGGTGAATATTGTTTTTCTCTGTTGGATGAAAATTGGACGCGAACTTTCGTCTTTTATTTTCTCTCCAATTCTTAAGAGCTAGCTGTTTGTTATGGAGGACGGGGATAACATTCTGGATGCCATATACGAGGAGGATACCTTAGATGATGACGTTGACATGGTTGATGTTGAAGAAGGAGAGTTGGTGGAGCCTGATTCCCAAAATGTTTTGGGACAAAGCAGTGCCGGAGATATCAACGAACCAAATCAAGAACCTCTCAGTAAGAACCAAAAGCGTAGAGCTAACAAGAAGAAGAATAAGAAGAAAAGGAAGGGTTCAGGATCTAATGCCATGGACATAAACAGATTTGTGTTAGATACATGTCGACGGCTCAAAGAGAAAAAGTCATACATGGTATACACTGCTGTGGGTTGCCTTGGGGTCTCTGCATTAAGTGATCTTGTCAATGAGGTGGATGCAATACAGACTTGTGGAGGCCAGAAAACTGCTGATGGTAGACGATTCCGGACAGGGGGTGGCATATTGTGGAGCATCTTGAAAGTTAGGGAACCAAAGGTCTACAAAGAGATAATAAAAAAAGCAAAGGAGTTTGAGAAACAATTCAGGCAACCTAATGTGATGCAACGACCGGTGCCAAAGAAAGAGGATTCTTCTCAAGGAGTGCCAGTTTCATTTTCTGGCAGGGATCTCGGCAATGTTTCGGACAGCAATATTCTTGCATCCCAGATGCAAAATCAACATCAACCAGCAACTTTGGAAGAAAAACCTGTATCTGCTCATGACAGGTTAAGGATACCTGTATCATATGATGATGATCTTCTTGGAGAGAATCCAATCAATGATGCAACCTGAATCTGGAAGTGAGTGGTCTTATAACTTGGCAAGATTTTCTTTCCTCTTAGAGGGAGATCTACCGATACATCTCTCTCATTCACCTTTGGGACTGGGGCTATACTACTTTCTCCTTTCTTCTGTTCCATTTTTCTCTCCGTCCTTCTCGTTTTCCTTTTTTCGCTTTTGAGAAACGAGTTCGCGGATGGAGCAGTATTTTCCGTTTTGATTTTTTTATTCCCGAAGGAAATTTGACATTTATGCTAGAGAGGTATTTATTTACTTTGCCTTCTAATATACTGGTAGTTACGAGGGGAAATTAGTATGAACCAAAAAATAGAAAGAAAGGAAAAGGATATTTACTGCGGGATGTGTTGTGATTCCTATTGGTCAACGATGTCACAAGTAGCTTTGGTTAGTGCGTGTATACTTCACTTCACTTCAATTCTTTTTTTTTTTTTTTGCCAGATTTCTTAGATTTTTATTTTAAAATTACCTTAAATCAAGTGGATACCGTTA

Coding sequences of Glyma06g05360

Limit To All Plant Sequences

>Glyma06g05360.1   sequence type=CDS   gene model=Glyma06g05360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACGGGGATAACATTCTGGATGCCATATACGAGGAGGATACCTTAGATGATGACGTTGACATGGTTGATGTTGAAGAAGGAGAGTTGGTGGAGCCTGATTCCCAAAATGTTTTGGGACAAAGCAGTGCCGGAGATATCAACGAACCAAATCAAGAACCTCTCAGTAAGAACCAAAAGCGTAGAGCTAACAAGAAGAAGAATAAGAAGAAAAGGAAGGGTTCAGGATCTAATGCCATGGACATAAACAGATTTGTGTTAGATACATGTCGACGGCTCAAAGAGAAAAAGTCATACATGGTATACACTGCTGTGGGTTGCCTTGGGGTCTCTGCATTAAGTGATCTTGTCAATGAGGTGGATGCAATACAGACTTGTGGAGGCCAGAAAACTGCTGATGGTAGACGATTCCGGACAGGGGGTGGCATATTGTGGAGCATCTTGAAAGTTAGGGAACCAAAGGTCTACAAAGAGATAATAAAAAAAGCAAAGGAGTTTGAGAAACAATTCAGGCAACCTAATGTGATGCAACGACCGGTGCCAAAGAAAGAGGATTCTTCTCAAGGAGTGCCAGTTTCATTTTCTGGCAGGGATCTCGGCAATGTTTCGGACAGCAATATTCTTGCATCCCAGATGCAAAATCAACATCAACCAGCAACTTTGGAAGAAAAACCTGTATCTGCTCATGACAGGTTAAGGATACCTGTATCATATGATGATGATCTTCTTGGAGAGAATCCAATCAATGATGCAACCTGA

>Glyma06g05360.3   sequence type=CDS   gene model=Glyma06g05360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACGGGGATAACATTCTGGATGCCATATACGAGGAGGATACCTTAGATGATGACGTTGACATGGTTGATGTTGAAGAAGGAGAGTTGGTGGAGCCTGATTCCCAAAATGTTTTGGGACAAAGCAGTGCCGGAGATATCAACGAACCAAATCAAGAACCTCTCAGTAAGAACCAAAAGCGTAGAGCTAACAAGAAGAAGAATAAGAAGAAAAGGAAGGGTTCAGGATCTAATGCCATGGACATAAACAGATTTGTGTTAGATACATGTCGACGGCTCAAAGAGAAAAAGTCATACATGGTATACACTGCTGTGGGTTGCCTTGGGGTCTCTGCATTAAGTGATCTTGTCAATGAGGTGGATGCAATACAGACTTGTGGAGGCCAGAAAACTGCTGATGGTAGACGATTCCGGACAGGGGGTGGCATATTGTGGAGCATCTTGAAAGTTAGGGAACCAAAGGTCTACAAAGAGATAATAAAAAAAGCAAAGGAGTTTGAGAAACAATTCAGGCAACCTAATGTGATGCAACGACCGGTGCCAAAGAAAGAGGATTCTTCTCAAGGAGTGCCAGTTTCATTTTCTGGCAGGGATCTCGGCAATGTTTCGGACAGCAATATTCTTGCATCCCAGATGCAAAATCAACATCAACCAGCAACTTTGGAAGAAAAACCTGTATCTGCTCATGACAGGTTAAGGATACCTGTATCATATGATGATGATCTTCTTGGAGAGAATCCAATCAATGATGCAACCTGA

Predicted protein sequences of Glyma06g05360

Limit To All Plant Sequences

>Glyma06g05360.1   sequence type=predicted peptide   gene model=Glyma06g05360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDGDNILDAIYEEDTLDDDVDMVDVEEGELVEPDSQNVLGQSSAGDINEPNQEPLSKNQKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVNEVDAIQTCGGQKTADGRRFRTGGGILWSILKVREPKVYKEIIKKAKEFEKQFRQPNVMQRPVPKKEDSSQGVPVSFSGRDLGNVSDSNILASQMQNQHQPATLEEKPVSAHDRLRIPVSYDDDLLGENPINDAT*

>Glyma06g05360.3   sequence type=predicted peptide   gene model=Glyma06g05360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDGDNILDAIYEEDTLDDDVDMVDVEEGELVEPDSQNVLGQSSAGDINEPNQEPLSKNQKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVNEVDAIQTCGGQKTADGRRFRTGGGILWSILKVREPKVYKEIIKKAKEFEKQFRQPNVMQRPVPKKEDSSQGVPVSFSGRDLGNVSDSNILASQMQNQHQPATLEEKPVSAHDRLRIPVSYDDDLLGENPINDAT*

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