SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19810 | AT | Annotation by Michelle Graham. TAIR10: CCCH-type zinc finger family protein | chr2:8550419-8551498 FORWARD LENGTH=359 | SoyBase | E_val: 4.00E-78 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0015996 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR14493 | Panther | UNKEMPT-RELATED | JGI | ISS | |
| PF00642 | PFAM | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | JGI | ISS | |
| UniRef100_G7J714 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J714_MEDTR | SoyBase | E_val: 2.00E-88 | ISS |
| UniRef100_I1K8B1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8B1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g05300 not represented in the dataset |
Glyma06g05300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g050300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g05300.1 sequence type=CDS gene model=Glyma06g05300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCCCAAACGTTGAAATCCCTCACTGGGACGCCGACGGAGGAGGACCACTCTCTCCGTTCATCTCTTCTTCTTCCAATGCTGACAAGTGCTCATTATTATTCTCCTCCGACCATTTCCGAATGTTCCAGTTCAAGGTCCGGATCTGTCCACGTGGCAGGTCCCACGATTGGACGGAGTGTCCCTACGCCCACCCTGCCGAGAAGGCTCGCCGCCGTGACCCCCGCAAGTACCACTACTCCGGCACCGCCTGCCCCGATTACCAGAAGGGGAACTGCAAGAGGGGCGACACTTGTCAGTTCTCGCACGGCGTCTTCGAATGCTGGCTCCATCCTTCTCGCTACCGGACCCACCTCTGCAAAGACGGAACCACTTGCCGCCGCAGAGTCTGCTTCTTCGCTCACACCACCGAACAACTCCGCCTCGTAGTAACGGATTCATCATCGTCCTCCTTTGTTTCCTCTCCCACTTCGGTCCTCAACTCTTCGTCCTTCTCCGATTCTTCGCCGTACAGCTTCGTGCGCGAAATAGTTAACTCAACGCGGAATGTTAAAATCGAGGATTCGGGTTTGACCCGTTGCGTGTTTGGGTCGCCACGTGGCGGGTTTTTAAGTGTGAATGGGTGCGAGGAGGAGCCTGCTATGGAGAGGGTGGAATCTGGGAAAGACATTAGAGCGAGAATCTATGCCAAGCTTAGTAGGGAGAACACGATTGGAGCCTCTGACCCTGACATTGGATGGGTTTCGGAACTCGTCAAATGA
>Glyma06g05300.1 sequence type=predicted peptide gene model=Glyma06g05300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIPNVEIPHWDADGGGPLSPFISSSSNADKCSLLFSSDHFRMFQFKVRICPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGTACPDYQKGNCKRGDTCQFSHGVFECWLHPSRYRTHLCKDGTTCRRRVCFFAHTTEQLRLVVTDSSSSSFVSSPTSVLNSSSFSDSSPYSFVREIVNSTRNVKIEDSGLTRCVFGSPRGGFLSVNGCEEEPAMERVESGKDIRARIYAKLSRENTIGASDPDIGWVSELVK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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