Glyma06g05290 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g05290

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3780199
stop:	3784537
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58370	AT	Annotation by Michelle Graham. TAIR10: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein \| chr1:21684751-21688209 FORWARD LENGTH=917	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0016798	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds	SoyBase	N/A	ISS
GO:0031176	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endo-1,4-beta-xylanase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PF00331	PFAM	Glycosyl hydrolase family 10	JGI		ISS
PF02018	PFAM	Carbohydrate binding domain	JGI		ISS
UniRef100_I1K8B0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K8B0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SM08	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F19C14.2 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SM08_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05290

Paralog	Evidence	Comments
Glyma04g05220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g050200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05290

Limit To All Plant Sequences

>Glyma06g05290.1   sequence type=CDS   gene model=Glyma06g05290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACTTGCAGAAGATCAATGCAGAAAACCACTCCGAGAAGACAACAAGCAAGGGATGTGTTTCCAGTGAAGATGAAAGCATCATAATAAACCCCCAGTTTGATGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGCATTACATGATTCTATGGGAGATGGGAAAATTCTTCCGAAGACTGGTAAAGTATTTGCATCTGCAACAGAACGTACACAAAGCTGGAACGGAATTCAGCAGGAGATCACTGGAAGAGTGCAGCGGAAGCTTGCCTACGAGGTTACGGCTGTAGTTCGGATATTCGGGAACAATGTCACAACTTCTGATGTTAGGGCTACTTTGTATGTTCAAGCACCAGATCTTCGGGAGCAGTATATAGGAATTGCCAATGTGCAGGCAACAGATAAAGATTGGGTTCAAATGCAGGGAAAGTTCCTTCTAAATGGTTCTCCATCAAAAGTAGTAGTTTATTTAGAAGGTCCCGCTCCAGGCACTGACATTCTTGTCAATACTTTTGTTATAAAACATGCAGATAAAACACCACCTTCAACTCCCCCGGATTGTGAGGGTGCTGCGTTTGGTGTTAATATAATTGAAAACAGTAATCTGGCCAATGGCACCAATGGGTGGTTTCCACTTGGTAATTGTACTTTGAGCGTTGGAACTGGTTCACCGCGTATCATTCCACCAATGGCAAGAGACTCTCTTGGACCTCATGAATCTTTAAGTGGGCGTTACGTCCTTGTAACCAACCGCACACAAACATGGATGGGTCCTGCTCAGATGATCACTGAGAAATTGAAACTCTTTTTAACTTATCAAGTATCTGCTTGGGTCCGAATTGGTAATGGATCAAGTGGGCCTCAAAATGTGAATGTTGCCCTTAGTGTTGACAACCAGTGGGTCAACGGAGGACAAGTTGAGGTTGCTGATGACAGGTGGCATGAAATTGGTGGGTCCTTTAGAATTGAAAAGCAGCCATCTAAGGTTATGGTTTATATTCAAGGTCCTGCTTCTGGTGTTGACTTAATGCTTGCTGGACTTCAAATTTTTGCTGTTGATAGACATGCAAGGTTTAAATATTTAAGGAGACAGACAGACAAGATCCGTAAGCGGGAGATCATCCTAAAATTCTCTGGTCTGGATTCAATTGGAAATCTTGGAACCCTGGTGAGAGTTAAACAAGTACAAAACGATTTCCCCATTGGATCGTGCATTAGTAGAAGCAACATTGACAACGAAGATTTTGTTGACTTCTTTGTGAAACATTTTAACTGGGCTGTTTTCGGGAATGAGCTGAAGTGGTATTGGACTGAGCCACAACAAGGGAATCTGAATTACAAGGATGCCGATGAAATGTTAGACTTATGTCAGAAGAACAAGATAGACACTCGGGGTCATTGCATCTTCTGGGATGTGGACAACACCGTTCAACAATGGATCAAATCACTGAATAAAACTGATTTGATGACAGCTGTCCAAAACCGCTTAAATGGCTTATTAACTCGCTACAAGGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATCAAGATAGACTAGGCAAAGATATAAGGGCAAACATGTTCAAGACCGCACACCAAATAGATCCATCTGCTACCCTTTTTGTGAATGATTATCATGTTGAAGATGGATGTGACACAAGATCATCACCAGAAAAGTACATTCAACACATTCTTGATTTGAAAGAGCAAGGTGCCCCAGTTAGTGGAATAGGAATTCAAGGTCACATAGATAGCCCTGTGGGGCCCATTGTTTGTTCTGCCCTTGATAAAATGGGAACTCTTGGCATACCAATATGGTTCACTGAGCTTGATGTGTCTTCCACTAATGAATATGTGAGAGCTGATGATCTTGAAGTTATGCTGCGGGAATCTTTGGCACACCCTGCTATAGATGGTGTTATGCTCTGGGGATTTTGGGAGTTGTTTATGAGTAGGGAAAATTCACACTTGGTGAATGCAGAAGGGGAACTCAACGAAGCTGGGAAAAGATACCTTGCTCTTAAACAAGAGTGGTTGTCTCACAGCCATGGTTATGTTGATGAGCAAGGGCAATTCAGCTTCAGAGGCTTCAGTGGAACATACAACGTTGAAGTTGTGACCTTAGCAAAGAAAGTTACCAAGACATTCGTTGTTGACAAGGGTGACTCATCTCTCGTGGTATCAATCGATTTATAA

Predicted protein sequences of Glyma06g05290

Limit To All Plant Sequences

>Glyma06g05290.1   sequence type=predicted peptide   gene model=Glyma06g05290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENLQKINAENHSEKTTSKGCVSSEDESIIINPQFDDGLNNWSGRGCKIALHDSMGDGKILPKTGKVFASATERTQSWNGIQQEITGRVQRKLAYEVTAVVRIFGNNVTTSDVRATLYVQAPDLREQYIGIANVQATDKDWVQMQGKFLLNGSPSKVVVYLEGPAPGTDILVNTFVIKHADKTPPSTPPDCEGAAFGVNIIENSNLANGTNGWFPLGNCTLSVGTGSPRIIPPMARDSLGPHESLSGRYVLVTNRTQTWMGPAQMITEKLKLFLTYQVSAWVRIGNGSSGPQNVNVALSVDNQWVNGGQVEVADDRWHEIGGSFRIEKQPSKVMVYIQGPASGVDLMLAGLQIFAVDRHARFKYLRRQTDKIRKREIILKFSGLDSIGNLGTLVRVKQVQNDFPIGSCISRSNIDNEDFVDFFVKHFNWAVFGNELKWYWTEPQQGNLNYKDADEMLDLCQKNKIDTRGHCIFWDVDNTVQQWIKSLNKTDLMTAVQNRLNGLLTRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQIDPSATLFVNDYHVEDGCDTRSSPEKYIQHILDLKEQGAPVSGIGIQGHIDSPVGPIVCSALDKMGTLGIPIWFTELDVSSTNEYVRADDLEVMLRESLAHPAIDGVMLWGFWELFMSRENSHLVNAEGELNEAGKRYLALKQEWLSHSHGYVDEQGQFSFRGFSGTYNVEVVTLAKKVTKTFVVDKGDSSLVVSIDL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain