Glyma06g05240 - SoyBase

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Report for Sequence Feature Glyma06g05240

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3733171
stop:	3738924
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37770	AT	Annotation by Michelle Graham. TAIR10: 1-amino-cyclopropane-1-carboxylate synthase 8 \| chr4:17752222-17753925 FORWARD LENGTH=469	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0042218	GO-bp	Annotation by Michelle Graham. GO Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0016847	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-aminocyclopropane-1-carboxylate synthase activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG0256	KOG	1-aminocyclopropane-1-carboxylate synthase, and related proteins	JGI		ISS
PTHR11751	Panther	SUBGROUP I AMINOTRANSFERASE RELATED	JGI		ISS
PTHR11751:SF26	Panther	TRANSCRIPTION REGULATOR AMINOTRANSFERASE GNTR-RELATED	JGI		ISS
PF00155	PFAM	Aminotransferase class I and II	JGI		ISS
UniRef100_B9GNK7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-aminocyclopropane-1-carboxylate n=1 Tax=Populus trichocarpa RepID=B9GNK7_POPTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339D3F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339D3F related cluster n=1 Tax=unknown RepID=UPI0002339D3F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05240

Paralog	Evidence	Comments
Glyma04g05150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g049900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g05240

Limit To All Plant Sequences

>Glyma06g05240.3   sequence type=transcript   gene model=Glyma06g05240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTTTTGTTCCATTACCCGTGATCACTCACTCACAATTGTGTTTCCGGTTCTCGATTAGGTTTGCTTACGCAGGCTAATTTAGTAGGTACACTTTGTAGTGTCTGTGATATGAACATGCTGTCTAGGAAGGCTAGTCATGACTCTCATGGCCAAGACTCTTCTTACTTTCTAGGGTGGCAAGAGTACGAGAAGAATCCTTACCACCCCATTCAAAATCCAACCGGAATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTTGACCTTCTTAAATCATGGCTTCGAAGAAATTCTGACATAGTAGGGATGAAGAAAGATGGAATATCCGTCTTTAGAGAGCTTGCTCTATTTCAAGATTACCATGGGTTACCTGCTTTAAAAAATGAACTGGTGGACTTTATGGCAAAAATAAGAGAAAATGGCATCAAATTTGCTTCGGAGAAGCTCGTTCTCACTGCCGGCGCAACTCCCGCGAATGAGATTCTGATGTTTTGCCTTGCTGATCCTGGGGAAGCTTTCATTCTTCCCACACCCTATTACCCTGGGTTTGATAGAGATCTGAAATGGAGAACCGGGGTTGAGATTGTTCCAATGCATTGCTCCAGCTCAAATGGCTTTAGAATCACTTCCTCTGCTTTAGAACAAGCCTACCAACAAGCACAAAAACTGAATCTCAAAATCAAAGGGGTTTTAGTAACCAACCCCTCAAACCCACTGGGCATAACCATGACCAAAACTGAGCTCAACCACCTAGTAGATTTCGCAATTGACAAAAACATTCACATAATAAGCGACGAAATCTACTCGGGTACTGTCTTCGACTCACCCAAATTCGTAAGCATCACAGAAGTTGTGAACGAGAGAATTACTACTGTCAACAACAATAGCATTACCAGCATTTGGAACCGCATTCACATTGTTTATGGTTTCTCCAAAGACCTTGGCATACCAGGATTTCGTGTGGGAATGATTTTCTCCAACAACGAAACTGTTGTGGCTGCTGCCACCAAAATGTCAAGCTTCGGATTGGTGTCTTCACAAACTCAGTATTTGGTGGCAAACTTGCTTAAGGACAAGAAATTCACTTGCAAGCACATGGAAGAGACTCAGAAGAGACTGAAGAGGCGAAAGGAGATGCTTGTGTCTGGCCTCAGAAACGCGGGGATTAGGTGTTTGAAAAGCAATGCTGGGTTGTTCTGTTGGGTTGACATGAGACACTTATTGGGCTCTGCCACTACTTTTGAGGCAGAGAAGGAGCTTTGGATGAACATTCTTTGCAAAGTTGGGTTGAACATATCTCCTGGCTCTTCTTGCCACTGCTGTGAACCAGGTTGGTTCAGGGTATGCTTTGCCAACATGTCTGAAGACACGTTAGAAGTTGCAATGCGGCGCATAAAGGCTTTTGCGGACTCAATTACCATCTCTACTAGTGTCGTAAGAGGATCCATTGCTAAGTGGGAAAATTAATTAATGTGGTTGAAGTTGATGAGTCTGTTTTCTCTCCAATTTAATAATAGAGAGAGACGTAGAGTGAATGAATATATTATACGAATTATAAGGGTGATGATTTCCTAGAATATATATTGCCGTAAGAAATCCTCCTAATGATCAAAGTTAAAATCACTCTTTCATGTTATGATTTCTTAAATATGTACATGATTTGTTAAATATATATCTACTAATTAATTATATGAAATTCTCTTAATGTGCCTTGTAACTTATTTCTTAAATGTGTATATAACTTTCTAAATATTTGCAAATATGTATATGGAA

Coding sequences of Glyma06g05240

Limit To All Plant Sequences

>Glyma06g05240.2   sequence type=CDS   gene model=Glyma06g05240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGCTGTCTAGGAAGGCTAGTCATGACTCTCATGGCCAAGACTCTTCTTACTTTCTAGGGTGGCAAGAGTACGAGAAGAATCCTTACCACCCCATTCAAAATCCAACCGGAATCATTCAGATGGGACTTGCAGAGAATCAGCTACTTTTACCGGGAAATAAAAGAAGAAAATATATTAACATGCTTTCATTTGACCTTCTTAAATCATGGCTTCGAAGAAATTCTGACATAGTAGGGATGAAGAAAGATGGAATATCCGTCTTTAGAGAGCTTGCTCTATTTCAAGATTACCATGGGTTACCTGCTTTAAAAAATGAACTGGTGGACTTTATGGCAAAAATAAGAGAAAATGGCATCAAATTTGCTTCGGAGAAGCTCGTTCTCACTGCCGGCGCAACTCCCGCGAATGAGATTCTGATGTTTTGCCTTGCTGATCCTGGGGAAGCTTTCATTCTTCCCACACCCTATTACCCTGGGTTTGATAGAGATCTGAAATGGAGAACCGGGGTTGAGATTGTTCCAATGCATTGCTCCAGCTCAAATGGCTTTAGAATCACTTCCTCTGCTTTAGAACAAGCCTACCAACAAGCACAAAAACTGAATCTCAAAATCAAAGGGGTTTTAGTAACCAACCCCTCAAACCCACTGGGCATAACCATGACCAAAACTGAGCTCAACCACCTAGTAGATTTCGCAATTGACAAAAACATTCACATAATAAGCGACGAAATCTACTCGGGTACTGTCTTCGACTCACCCAAATTCGTAAGCATCACAGAAGTTGTGAACGAGAGAATTACTACTGTCAACAACAATAGCATTACCAGCATTTGGAACCGCATTCACATTGTTTATGGTTTCTCCAAAGACCTTGGCATACCAGGATTTCGTGTGGGAATGATTTTCTCCAACAACGAAACTGTTGTGGCTGCTGCCACCAAAATGTCAAGCTTCGGATTGGTGTCTTCACAAACTCAGTATTTGGTGGCAAACTTGCTTAAGGACAAGAAATTCACTTGCAAGCACATGGAAGAGACTCAGAAGAGACTGAAGAGGCGAAAGGAGATGCTTGTGTCTGGCCTCAGAAACGCGGGGATTAGGTGTTTGAAAAGCAATGCTGGGTTGTTCTGTTGGGTTGACATGAGACACTTATTGGGCTCTGCCACTACTTTTGAGGCAGAGAAGGAGCTTTGGATGAACATTCTTTGCAAAGTTGGGTTGAACATATCTCCTGGCTCTTCTTGCCACTGCTGTGAACCAGGTTGGTTCAGGGTATGCTTTGCCAACATGTCTGAAGACACGTTAGAAGTTGCAATGCGGCGCATAAAGGCTTTTGCGGACTCAATTACCATCTCTACTAGTGTCGTAAGAGGATCCATTGCTAAGTGGGAAAATTAA

>Glyma06g05240.3   sequence type=CDS   gene model=Glyma06g05240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATGCTGTCTAGGAAGGCTAGTCATGACTCTCATGGCCAAGACTCTTCTTACTTTCTAGGGTGGCAAGAGTACGAGAAGAATCCTTACCACCCCATTCAAAATCCAACCGGAATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTTGACCTTCTTAAATCATGGCTTCGAAGAAATTCTGACATAGTAGGGATGAAGAAAGATGGAATATCCGTCTTTAGAGAGCTTGCTCTATTTCAAGATTACCATGGGTTACCTGCTTTAAAAAATGAACTGGTGGACTTTATGGCAAAAATAAGAGAAAATGGCATCAAATTTGCTTCGGAGAAGCTCGTTCTCACTGCCGGCGCAACTCCCGCGAATGAGATTCTGATGTTTTGCCTTGCTGATCCTGGGGAAGCTTTCATTCTTCCCACACCCTATTACCCTGGGTTTGATAGAGATCTGAAATGGAGAACCGGGGTTGAGATTGTTCCAATGCATTGCTCCAGCTCAAATGGCTTTAGAATCACTTCCTCTGCTTTAGAACAAGCCTACCAACAAGCACAAAAACTGAATCTCAAAATCAAAGGGGTTTTAGTAACCAACCCCTCAAACCCACTGGGCATAACCATGACCAAAACTGAGCTCAACCACCTAGTAGATTTCGCAATTGACAAAAACATTCACATAATAAGCGACGAAATCTACTCGGGTACTGTCTTCGACTCACCCAAATTCGTAAGCATCACAGAAGTTGTGAACGAGAGAATTACTACTGTCAACAACAATAGCATTACCAGCATTTGGAACCGCATTCACATTGTTTATGGTTTCTCCAAAGACCTTGGCATACCAGGATTTCGTGTGGGAATGATTTTCTCCAACAACGAAACTGTTGTGGCTGCTGCCACCAAAATGTCAAGCTTCGGATTGGTGTCTTCACAAACTCAGTATTTGGTGGCAAACTTGCTTAAGGACAAGAAATTCACTTGCAAGCACATGGAAGAGACTCAGAAGAGACTGAAGAGGCGAAAGGAGATGCTTGTGTCTGGCCTCAGAAACGCGGGGATTAGGTGTTTGAAAAGCAATGCTGGGTTGTTCTGTTGGGTTGACATGAGACACTTATTGGGCTCTGCCACTACTTTTGAGGCAGAGAAGGAGCTTTGGATGAACATTCTTTGCAAAGTTGGGTTGAACATATCTCCTGGCTCTTCTTGCCACTGCTGTGAACCAGGTTGGTTCAGGGTATGCTTTGCCAACATGTCTGAAGACACGTTAGAAGTTGCAATGCGGCGCATAAAGGCTTTTGCGGACTCAATTACCATCTCTACTAGTGTCGTAAGAGGATCCATTGCTAAGTGGGAAAATTAA

Predicted protein sequences of Glyma06g05240

Limit To All Plant Sequences

>Glyma06g05240.2   sequence type=predicted peptide   gene model=Glyma06g05240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMLSRKASHDSHGQDSSYFLGWQEYEKNPYHPIQNPTGIIQMGLAENQLLLPGNKRRKYINMLSFDLLKSWLRRNSDIVGMKKDGISVFRELALFQDYHGLPALKNELVDFMAKIRENGIKFASEKLVLTAGATPANEILMFCLADPGEAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSSNGFRITSSALEQAYQQAQKLNLKIKGVLVTNPSNPLGITMTKTELNHLVDFAIDKNIHIISDEIYSGTVFDSPKFVSITEVVNERITTVNNNSITSIWNRIHIVYGFSKDLGIPGFRVGMIFSNNETVVAAATKMSSFGLVSSQTQYLVANLLKDKKFTCKHMEETQKRLKRRKEMLVSGLRNAGIRCLKSNAGLFCWVDMRHLLGSATTFEAEKELWMNILCKVGLNISPGSSCHCCEPGWFRVCFANMSEDTLEVAMRRIKAFADSITISTSVVRGSIAKWEN*

>Glyma06g05240.3   sequence type=predicted peptide   gene model=Glyma06g05240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNMLSRKASHDSHGQDSSYFLGWQEYEKNPYHPIQNPTGIIQMGLAENQLSFDLLKSWLRRNSDIVGMKKDGISVFRELALFQDYHGLPALKNELVDFMAKIRENGIKFASEKLVLTAGATPANEILMFCLADPGEAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSSNGFRITSSALEQAYQQAQKLNLKIKGVLVTNPSNPLGITMTKTELNHLVDFAIDKNIHIISDEIYSGTVFDSPKFVSITEVVNERITTVNNNSITSIWNRIHIVYGFSKDLGIPGFRVGMIFSNNETVVAAATKMSSFGLVSSQTQYLVANLLKDKKFTCKHMEETQKRLKRRKEMLVSGLRNAGIRCLKSNAGLFCWVDMRHLLGSATTFEAEKELWMNILCKVGLNISPGSSCHCCEPGWFRVCFANMSEDTLEVAMRRIKAFADSITISTSVVRGSIAKWEN*

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