Glyma06g05220 - SoyBase

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Report for Sequence Feature Glyma06g05220

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3712770
stop:	3716049
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65810	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:26337833-26339144 REVERSE LENGTH=258	SoyBase	E_val: 3.00E-121	ISS
GO:0010394	GO-bp	Annotation by Michelle Graham. GO Biological Process: homogalacturonan metabolic process	SoyBase	N/A	ISS
GO:0045488	GO-bp	Annotation by Michelle Graham. GO Biological Process: pectin metabolic process	SoyBase	N/A	ISS
GO:0000139	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K8A1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K8A1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FH88	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB66910.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FH88_ARATH	SoyBase	E_val: 1.00E-87	ISS

Expression Patterns of Glyma06g05220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05220

Paralog	Evidence	Comments
Glyma04g05140	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g049700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g05220

Limit To All Plant Sequences

>Glyma06g05220.2   sequence type=transcript   gene model=Glyma06g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCATGCGCGTTTTGGAGGACAGGCAGAATGCACGAAGTTCAGATCTCGTCTTTGATACCAATTTCATAGAGCAAGTTCTATAACATTGTACAGATCCGTGTCCCGAACATGTTCAATAATATGGAATAATTTTCTTCCTAGTTCATATGTCTGTGGAGCAACCTTTAACATTCGCCTATTTCTTCTTCTTCTTTTGATATAGCTCCAACGATTAATATACTATATAACATCGCTGTGGTGATAACATAAACAATTGAATCATGTCGCGGAGACCGGCGAATCCGTCTCGGCGATTCGGGGACAGTGGAGGTGGATTGTTTTCATCTTCGAAATCAAAGGCGTCACCGGTTTTGTCGGTTGGGCTCATAATTGTGGGATGTCTGTTTCTCATTGCGTATGTGTACAAGGGCTCAGGCGGGTTTGGTAGCCATTTGGAGTCTGTGAGCAGGGTTGAAGGAGATTATTTGTGTGCTAGAGAGGTCCTACGAGCAATTCCCGTTTTGCAGAAAGCATATGGTGATAGCTTACATAAAGTTTTGCATGTTGGTCCTGATACTTGCTATGTGGTCTCTAAATTTTTAAAGGAGGAGGAAACTGAAGCCTGGGGTATAGAACCTTATGATGTAGAGGATGCTGATGGTAATTGCAAAGCACTTATCCTCAAAGGCATTGTGCGTATGGCTGATATCAAGTTTCCTCTTCCATACAGGCCAAAATCTTTCTCTCTCGTAATTGTTTCGGATGCCCTTGATTTCTTATCTCCCAGATACCTTAACAAAACTCTTCCAGATTTGGCAAGGGTATCAGCTGATGGAATAGTGATATTTACTGGTAAGTGCACTTAAATTTGTGCCTAATCCTGTCTAAAAACTAGAAAATCTTTTTCAGTCCAAGGAGATTCCTGTGATCTGTCATTAATTCACATAGCTTTATTAGAGTAAAAAATAATAACGAGGAAATGACAATGACATATGTTTCCAGCATTACTTTGGTTCACAAGCTATATAGGAATAATCTTTTTGGAGCATTGAATTGATGAGACTGGTGTCCAGTATAATATTTGTTTATAGAGCAGTAGTGTGTTTTAGCTTATAGGAACCATACTCTTAAATTCTCTGTTACTGGATTTGATATGAATCAAAGGCTTTCTTTGGTTTAAATTTTGATGTATTACTAAGATTTTGAGGTTTTCATGTGTTGGCACTGGTAGGTTGAAAGATTATCTTTAGCAGCAATCAATAATTTGTCCAACTTTTTTCTGGCATATTGGCATCTGATTATTTTATGTGTAAATTTAGGTTTTCCAGATAATCAAAAGGCTAAGGTTGCAGATGTTTCTAAAATGGGAAGAGCGGCTAAGATGAGGAGTTCATCCTGGTGGGTTCGGTTTTTCCTTTCGATTAACTTAGAGGAGAATGAAACTGCTTCCAAAAAGTTTGCACAGGCTTCAACTAAGAGTTCATACATTTCAAATTGCCAGATATTCCACCTGAAGTCTCTCCATTGACTTTCAGGAATCAGGATGATTACATTTGTACCCTGTGTTTTCATCTACAATGCTTTCTTTTATAAAGGCAATTTAATTAATCAAATTTTATTCACCATAAAAGGTGTATCTGTTGCTGGCTTTAATAGATTTATATTCTTTGTCATACCAGCTCTTGGCGGAAAAGGATAAATGAGTTTGGTATTTAACTAATTTATCAATTGAATAGGTGATCTAAAGTGTAGTGGCACTGTGGCAGTGATTGTTGTACTTAAAGGGATACTCCTTTTTCCTTGAGATATAAATTGAATCTCATTACATATGCTGGATTAATCTGGTAAAATGATGAACGACCACA

>Glyma06g05220.3   sequence type=transcript   gene model=Glyma06g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCATGCGCGTTTTGGAGGACAGGCAGAATGCACGAAGTTCAGATCTCGTCTTTGATACCAATTTCATAGAGCAAGTTCTATAACATTGTACAGATCCGTGTCCCGAACATGTTCAATAATATGGAATAATTTTCTTCCTAGTTCATATGTCTGTGGAGCAACCTTTAACATTCGCCTATTTCTTCTTCTTCTTTTGATATAGCTCCAACGATTAATATACTATATAACATCGCTGTGGTGATAACATAAACAATTGAATCATGTCGCGGAGACCGGCGAATCCGTCTCGGCGATTCGGGGACAGTGGAGGTGGATTGTTTTCATCTTCGAAATCAAAGGCGTCACCGGTTTTGTCGGTTGGGCTCATAATTGTGGGATGTCTGTTTCTCATTGCGTATGTGTACAAGGGCTCAGGCGGGTTTGGTAGCCATTTGGAGTCTGTGAGCAGGGTTGAAGGAGATTATTTGTGTGCTAGAGAGGTCCTACGAGCAATTCCCGTTTTGCAGAAAGCATATGGTGATAGCTTACATAAAGTTTTGCATGTTGGTCCTGATACTTGCTATGTGGTCTCTAAATTTTTAAAGGAGGAGGAAACTGAAGCCTGGGGTATAGAACCTTATGATGTAGAGGATGCTGATGGTAATTGCAAAGCACTTATCCTCAAAGGCATTGTGCGTATGGCTGATATCAAGTTTCCTCTTCCATACAGGCCAAAATCTTTCTCTCTCGTAATTGTTTCGGATGCCCTTGATTTCTTATCTCCCAGATACCTTAACAAAACTCTTCCAGATTTGGCAAGGGTATCAGCTGATGGAATAGTGATATTTACTGGTTTTCCAGATAATCAAAAGGCTAAGGTTGCAGATGTTTCTAAAATGGGAAGAGCGGTGAGTACATTTTACATAGAGCAATCATAATTTTATTGTTATCATTACTTCAATAAAAATTGTATTGATCTAGGATGAATATTTAGGACGCCCATGATCTAGATCCCCAACCTTTTTGAAGCAAAGAATATCACATATCTATCTGTCTACACATTTGGTTTATAAACAATGGAGGGTTTTTTTTTTTTTAACTGATTTGTCTTGTTTCAGGCTAAGATGAGGAGTTCATCCTGGTGGGTTCGGTTTTTCCTTTCGATTAACTTAGAGGAGAATGAAACTGCTTCCAAAAAGTTTGCACAGGCTTCAACTAAGAGTTCATACATTTCAAATTGCCAGATATTCCACCTGAAGTCTCTCCATTGACTTTCAGGAATCAGGATGATTACATTTGTACCCTGTGTTTTCATCTACAATGCTTTCTTTTATAAAGGCAATTTAATTAATCAAATTTTATTCACCATAAAAGGTGTATCTGTTGCTGGCTTTAATAGATTTATATTCTTTGTCATACCAGCTCTTGGCGGAAAAGGATAAATGAGTTTGGTATTTAACTAATTTATCAATTGAATAGGTGATCTAAAGTGTAGTGGCACTGTGGCAGTGATTGTTGTACTTAAAGGGATACTCCTTTTTCCTTGAGATATAAATTGAATCTCATTACATATGCTGGATTAATCTGGTAAAATGATGAACGACCACA

Coding sequences of Glyma06g05220

Limit To All Plant Sequences

>Glyma06g05220.1   sequence type=CDS   gene model=Glyma06g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCGGAGACCGGCGAATCCGTCTCGGCGATTCGGGGACAGTGGAGGTGGATTGTTTTCATCTTCGAAATCAAAGGCGTCACCGGTTTTGTCGGTTGGGCTCATAATTGTGGGATGTCTGTTTCTCATTGCGTATGTGTACAAGGGCTCAGGCGGGTTTGGTAGCCATTTGGAGTCTGTGAGCAGGGTTGAAGGAGATTATTTGTGTGCTAGAGAGGTCCTACGAGCAATTCCCGTTTTGCAGAAAGCATATGGTGATAGCTTACATAAAGTTTTGCATGTTGGTCCTGATACTTGCTATGTGGTCTCTAAATTTTTAAAGGAGGAGGAAACTGAAGCCTGGGGTATAGAACCTTATGATGTAGAGGATGCTGATGGTAATTGCAAAGCACTTATCCTCAAAGGCATTGTGCGTATGGCTGATATCAAGTTTCCTCTTCCATACAGGCCAAAATCTTTCTCTCTCGTAATTGTTTCGGATGCCCTTGATTTCTTATCTCCCAGATACCTTAACAAAACTCTTCCAGATTTGGCAAGGGTATCAGCTGATGGAATAGTGATATTTACTGGTTTTCCAGATAATCAAAAGGCTAAGGTTGCAGATGTTTCTAAAATGGGAAGAGCGGCTAAGATGAGGAGTTCATCCTGGTGGGTTCGGTTTTTCCTTTCGATTAACTTAGAGGAGAATGAAACTGCTTCCAAAAAGTTTGCACAGGCTTCAACTAAGAGTTCATACATTTCAAATTGCCAGATATTCCACCTGAAGTCTCTCCATTGA

>Glyma06g05220.2   sequence type=CDS   gene model=Glyma06g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCGGAGACCGGCGAATCCGTCTCGGCGATTCGGGGACAGTGGAGGTGGATTGTTTTCATCTTCGAAATCAAAGGCGTCACCGGTTTTGTCGGTTGGGCTCATAATTGTGGGATGTCTGTTTCTCATTGCGTATGTGTACAAGGGCTCAGGCGGGTTTGGTAGCCATTTGGAGTCTGTGAGCAGGGTTGAAGGAGATTATTTGTGTGCTAGAGAGGTCCTACGAGCAATTCCCGTTTTGCAGAAAGCATATGGTGATAGCTTACATAAAGTTTTGCATGTTGGTCCTGATACTTGCTATGTGGTCTCTAAATTTTTAAAGGAGGAGGAAACTGAAGCCTGGGGTATAGAACCTTATGATGTAGAGGATGCTGATGGTAATTGCAAAGCACTTATCCTCAAAGGCATTGTGCGTATGGCTGATATCAAGTTTCCTCTTCCATACAGGCCAAAATCTTTCTCTCTCGTAATTGTTTCGGATGCCCTTGATTTCTTATCTCCCAGATACCTTAACAAAACTCTTCCAGATTTGGCAAGGGTATCAGCTGATGGAATAGTGATATTTACTGGTAAGTGCACTTAA

>Glyma06g05220.3   sequence type=CDS   gene model=Glyma06g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCGGAGACCGGCGAATCCGTCTCGGCGATTCGGGGACAGTGGAGGTGGATTGTTTTCATCTTCGAAATCAAAGGCGTCACCGGTTTTGTCGGTTGGGCTCATAATTGTGGGATGTCTGTTTCTCATTGCGTATGTGTACAAGGGCTCAGGCGGGTTTGGTAGCCATTTGGAGTCTGTGAGCAGGGTTGAAGGAGATTATTTGTGTGCTAGAGAGGTCCTACGAGCAATTCCCGTTTTGCAGAAAGCATATGGTGATAGCTTACATAAAGTTTTGCATGTTGGTCCTGATACTTGCTATGTGGTCTCTAAATTTTTAAAGGAGGAGGAAACTGAAGCCTGGGGTATAGAACCTTATGATGTAGAGGATGCTGATGGTAATTGCAAAGCACTTATCCTCAAAGGCATTGTGCGTATGGCTGATATCAAGTTTCCTCTTCCATACAGGCCAAAATCTTTCTCTCTCGTAATTGTTTCGGATGCCCTTGATTTCTTATCTCCCAGATACCTTAACAAAACTCTTCCAGATTTGGCAAGGGTATCAGCTGATGGAATAGTGATATTTACTGGTTTTCCAGATAATCAAAAGGCTAAGGTTGCAGATGTTTCTAAAATGGGAAGAGCGGTGAGTACATTTTACATAGAGCAATCATAA

Predicted protein sequences of Glyma06g05220

Limit To All Plant Sequences

>Glyma06g05220.1   sequence type=predicted peptide   gene model=Glyma06g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRRPANPSRRFGDSGGGLFSSSKSKASPVLSVGLIIVGCLFLIAYVYKGSGGFGSHLESVSRVEGDYLCAREVLRAIPVLQKAYGDSLHKVLHVGPDTCYVVSKFLKEEETEAWGIEPYDVEDADGNCKALILKGIVRMADIKFPLPYRPKSFSLVIVSDALDFLSPRYLNKTLPDLARVSADGIVIFTGFPDNQKAKVADVSKMGRAAKMRSSSWWVRFFLSINLEENETASKKFAQASTKSSYISNCQIFHLKSLH*

>Glyma06g05220.2   sequence type=predicted peptide   gene model=Glyma06g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRRPANPSRRFGDSGGGLFSSSKSKASPVLSVGLIIVGCLFLIAYVYKGSGGFGSHLESVSRVEGDYLCAREVLRAIPVLQKAYGDSLHKVLHVGPDTCYVVSKFLKEEETEAWGIEPYDVEDADGNCKALILKGIVRMADIKFPLPYRPKSFSLVIVSDALDFLSPRYLNKTLPDLARVSADGIVIFTGKCT*

>Glyma06g05220.3   sequence type=predicted peptide   gene model=Glyma06g05220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRRPANPSRRFGDSGGGLFSSSKSKASPVLSVGLIIVGCLFLIAYVYKGSGGFGSHLESVSRVEGDYLCAREVLRAIPVLQKAYGDSLHKVLHVGPDTCYVVSKFLKEEETEAWGIEPYDVEDADGNCKALILKGIVRMADIKFPLPYRPKSFSLVIVSDALDFLSPRYLNKTLPDLARVSADGIVIFTGFPDNQKAKVADVSKMGRAVSTFYIEQS*

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