Report for Sequence Feature Glyma06g05200
Feature Type: gene_model
Chromosome: Gm06
Start: 3699232
stop: 3703759
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g05200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G58440 AT
Annotation by Michelle Graham. TAIR10: FAD/NAD(P)-binding oxidoreductase family protein | chr1:21714094-21717246 REVERSE LENGTH=531
SoyBase E_val: 0 ISS
GO:0000271 GO-bp
Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009228 GO-bp
Annotation by Michelle Graham. GO Biological Process: thiamine biosynthetic process
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0016126 GO-bp
Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process
SoyBase N/A ISS
GO:0016132 GO-bp
Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process
SoyBase N/A ISS
GO:0019745 GO-bp
Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
GO:0016021 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane
SoyBase N/A ISS
GO:0004506 GO-mf
Annotation by Michelle Graham. GO Molecular Function: squalene monooxygenase activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0050660 GO-mf
Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding
SoyBase N/A ISS
KOG1298
KOG
Squalene monooxygenase
JGI ISS
PTHR10835 Panther
SQUALENE MONOOXYGENASE
JGI ISS
PF00890 PFAM
FAD binding domain
JGI ISS
PF08491 PFAM
Squalene epoxidase
JGI ISS
UniRef100_I1K897 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K897_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8GSM8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Squalene monooxygenase 1 n=1 Tax=Medicago truncatula RepID=Q8GSM8_MEDTR
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g05200
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g05200
Paralog Evidence Comments
Glyma04g05110 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g05200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g049500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g05200
Coding sequences of Glyma06g05200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g05200.1 sequence type=CDS gene model=Glyma06g05200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGGACCCCTACGTGCTCGGATGGATCATATGCGCCGTGCTCAGCCTCGTCGCGCTTCGCAATTTCGCTTTCGCGCGGAAGAACCGTTGCCATTCGTCTGAGACCGATGCCACTCGCCGCGCGGAAAATGTCACCACCGCCGCCGGAGAATGCAGATCCTCGAGTCGCGACGGCGACGTTGACGTCATTATTGTCGGAGCTGGTGTCGCCGGCTCCGCTCTCGCTCACACTCTCGGCAAGGATGGGCGTCGGGTACTTGTCATTGAAAGAGATTTGAGTGAACAAGACCGAATTGTTGGGGAGTTGCTACAACCTGGAGGCTATCTCAAATTAATTGAGCTGGGACTTGAAGATTGTGTGGAGAAAATTGATGCTCAACTAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAGCACACAAGACTCTCTTATCCCTTGGAAAAGTTTCACTCAGATGTTGCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCCTTTCCAATGTACGACTGGAGCAAGGAACAGTCACTTCCCTACTTGAAGAGAAGGGGGTTATTAAAGGTGTGCACTACAAAACGAAGGATAGTCAAGAATTATCAGCTTGTGCACCCCTTACCGTTGTTTGTGATGGCTGTTTCTCAAACTTGCGCCGATCTCTTTGTAATCCTAAGGTAGATGTTCCCTCTCATTTCGTTGGCTTAATTTTGGAGAGTTGTGAACTTCCTTATGCTAATCATGGCCATGTCATACTGGGAGATCCTTCGCCAGTTCTGTTCTATCGGATAAGTAGTTCAGAAATTCGTTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATTTCGAATGGTGAAATGACAAATTATTTGAAGACAGTGGTAGCTCCACAGATTCCACCTGAGCTTCATGACTCATTCGTAGCTGCAGTGGACAAAGGCAACATCAGGACAATGCCAAACAGAAGCATGCCAGCAGCTCCTTATCCTACGCCCGGAGCCCTGTTGATGGGAGATGCATTCAACATGCGCCATCCTCTAACCGGGGGTGGAATGACTGTGGCATTATCTGACATAGTAGTGCTGCGAAATCTTCTGAGACCTTTGCGTGACCTGAATGATGCACCTGGCCTTTGCAAATACCTAGAATCCTTTTATACCTTACGCAAGCCTGTGGCATCCACTATAAATACGTTGGCAGGAGCACTTTACAAGGTTTTTTGCGCATCACCTGATCCAGCAAGGAAGGAAATGCGCCAAGCTTGCTTCGATTATCTTAGTCTTGGAGGTCTATTCTCGGAAGGGCCAGTCTCTTTGCTTTCAGGATTAAACCCTCGGCCCTTGAGCCTGGTTCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTACTGCTACCATTTCCTTCACCTAAACGGATGTGGATTGGAGTCCGATTAATTTCTAGTGCATCTGGAATCATCTTGCCAATAATTAAGGCAGAAGGAGTCCGTCAGATGTTCTTCCCTGCAACTGTTCCAGCTTACTATAGAAATCCCCCGGCCCAATAA
Predicted protein sequences of Glyma06g05200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g05200.1 sequence type=predicted peptide gene model=Glyma06g05200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVDPYVLGWIICAVLSLVALRNFAFARKNRCHSSETDATRRAENVTTAAGECRSSSRDGDVDVIIVGAGVAGSALAHTLGKDGRRVLVIERDLSEQDRIVGELLQPGGYLKLIELGLEDCVEKIDAQLVFGYALFKDGKHTRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAASLSNVRLEQGTVTSLLEEKGVIKGVHYKTKDSQELSACAPLTVVCDGCFSNLRRSLCNPKVDVPSHFVGLILESCELPYANHGHVILGDPSPVLFYRISSSEIRCLVDVPGQKVPSISNGEMTNYLKTVVAPQIPPELHDSFVAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLRDLNDAPGLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRMWIGVRLISSASGIILPIIKAEGVRQMFFPATVPAYYRNPPAQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
