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Report for Sequence Feature Glyma06g05181

Feature Type:gene_model
Chromosome:Gm06
Start:3672576
stop:3676028
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g05181
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10120AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:3304228-3305984 REVERSE LENGTH=366 SoyBaseE_val: 5.00E-51ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR12565Panther STEROL REGULATORY ELEMENT-BINDING PROTEIN JGI ISS
PTHR12565:SF7Panther CENTROMERE-BINDING PROTEIN 1, CBP-1 JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_B9R6V4UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9R6V4_RICCO SoyBaseE_val: 3.00E-82ISS
UniRef100_UPI0002339681UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339681 related cluster n=1 Tax=unknown RepID=UPI0002339681 SoyBaseE_val: 7.00E-176ISS

Expression Patterns of Glyma06g05181
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g05181 not represented in the dataset
Glyma06g05181 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05181
ParalogEvidenceComments
Glyma04g05091 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05181 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g049300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g05181
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g05181
>Glyma06g05181.1   sequence type=CDS   gene model=Glyma06g05181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGATCTTGAAAATGCATTGGGGCTTCAAAGTGTTTCAGAAATGACAGTTAGTTCTGCCTCTATGGCTATGCCTTCAGGCGCGGCTAATCCTTTTCTTTCTTCTTCCGCTTGGGATCCACTTGTTCCTTTGAGTCAAACTTTTGGAGGCTCTCTCGTGGTTTCTCATAGTGAGTTTGCCCATTCAGCTTACCCTTTTGTTATGAACTGTGACTCTCACTTTGTTCAATATGTATCTGACTCAAATTTTGAGCACATGGCCCTTAAGGTTCCCTCCATTGGCCAAACGGGTTGTTATGATATAGATAATAACATAGGGTATCTGCCAAATCATAATCCGAGTAATGAGTCTGGAATAGAAAGGAATCAATTAAATAATGAGAAATCTAAGCACGAAGATTCTACTTCTGAAGAAGGAGCTGCACCTGGTGAACATAAAAGAAAACGAGGACTTTACTATAATGTTACTTTCAGTTCAAATAAGAATGCTGAGGGGGAAACACTTCAAAATTCTTCTGGGAAGAGCTGTGATGATGTGAAAGAACAATGTGAAAAGAAACCAAAATTTGCACAAAATAGTGCAGCTAACTTATGTGGAAAGCAATTGCTGAAGCACAAGAAAGATGACTCCGAGAGTGAAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGAACCCGAAGAGGTCAAGCTACAAACAGTCACAACCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCGAAAAGATAACGGGTAAAGCGGTAATGCTGGATGAGATTATAAACTATGTGCAATTACTGCAACAACAGGTTGAGTTTTTGTCTATGAAACTTGCCACTGTAAACTCAATTGAATTTTAA
Predicted protein sequences of Glyma06g05181
>Glyma06g05181.1   sequence type=predicted peptide   gene model=Glyma06g05181   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDLENALGLQSVSEMTVSSASMAMPSGAANPFLSSSAWDPLVPLSQTFGGSLVVSHSEFAHSAYPFVMNCDSHFVQYVSDSNFEHMALKVPSIGQTGCYDIDNNIGYLPNHNPSNESGIERNQLNNEKSKHEDSTSEEGAAPGEHKRKRGLYYNVTFSSNKNAEGETLQNSSGKSCDDVKEQCEKKPKFAQNSAANLCGKQLLKHKKDDSESEEAPKENFIHVRTRRGQATNSHNLAERVRREKISERMRLLQELVPGCEKITGKAVMLDEIINYVQLLQQQVEFLSMKLATVNSIEF*






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