Glyma06g05040 - SoyBase

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Report for Sequence Feature Glyma06g05040

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3567680
stop:	3569919
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27480	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr1:9544607-9546168 FORWARD LENGTH=432	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0004607	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylcholine-sterol O-acyltransferase activity	SoyBase	N/A	ISS
GO:0008374	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-acyltransferase activity	SoyBase	N/A	ISS
KOG2369	KOG	Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase	JGI		ISS
PTHR11440	Panther	LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED	JGI		ISS
PTHR11440:SF12	Panther	PHOSPHATIDYLCHOLINE-STEROL ACYLTRANSFERASE-RELATED	JGI		ISS
PF02450	PFAM	Lecithin:cholesterol acyltransferase	JGI		ISS
UniRef100_I1K884	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K884_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q71CE5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lecithine cholesterol acyltransferase-like protein n=1 Tax=Medicago truncatula RepID=Q71CE5_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05040

Paralog	Evidence	Comments
Glyma04g04961	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g047700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05040

Limit To All Plant Sequences

>Glyma06g05040.1   sequence type=CDS   gene model=Glyma06g05040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAGGAACAAGAAGAGGGTCTCAAGATTGAGGTTGCTACACTCACAGTTACAGTAGTTGTTGTGATGCTGTCATTGCTATGCACATGTGGGGCAAGCAACCTCGACCCTTTGATTCTAATACCAGGTAACGGAGGGAACCAACTAGAAGCAAGGTTGACCAATCAGTACAAGCCCTCTACTTTCATCTGCGAATCATGGTACCCTCTCATCAAGAAAAAGAATGGATGGTTCAGACTTTGGTTTGATTCCAGTGTCATACTTGCTCCTTTCACTCAATGCTTTGCCGAACGCATGACCCTTCATTACCACCAAGAACTCGATGATTACTTCAACACTCCTGGGGTTGAGACCCGGGTCCCTCACTTTGGTTCCACCAACTCTCTTCTCTATCTCAATCCTCGTCTCAAGCATATCACCGGATACATGGCACCCCTGGTAGATTCATTACAAAAGCTTGGCTACGCTGATGGTGAGACTCTGTTTGGAGCCCCTTATGACTTTAGATATGGTCTAGCTGCTGAAGGTCACCCTTCACAAGTGGGTTCCAAGTTCCTCAAAGATCTAAAGAATTTGATAGAAGAAGCAAGCAATTCCAATAATGGGAAGCCAGTGATACTTCTCTCCCACAGTTTAGGAGGCCTATTTGTCCTACAACTACTAAATAGAAACCCCCCCTCTTGGCGCAAAAAATTCATCAAACACTTCATTGCTCTTTCAGCTCCATGGGGTGGTGCTATAGACGAAATGTACACCTTTGCATCTGGCAACACTTTGGGAGTGCCCCTAGTGGACCCTTTATTAGTGAGGGATGAACAAAGAAGCTCCGAGAGTAACCTTTGGCTTTTGCCTAACCCAAAAATTTTTGGTCCTCAAAAACCAATAGTGATAACTCCAAATAAGACCTATTCAGCTCATGACATGGTTGATTTTCTAAAAGACATTGGTTTTCCTGAAGGGGTTTATCCTTATGAAACACGAATTCTACCCTTGATAGGGAACATAAAAGCACCACAAGTGCCTATAACTTGTATTATGGGAACGGGAGTGGGAACCTTGGAAACATTGTTTTATGGGAAAGGTGATTTTGATGAACGGCCAGAAATATCATATGGGGATGGTGATGGAACGGTGAACTTGGTGAGCTTGTTGGCGCTTCAATCACTATGGAAAGAGGAGAAAAATCAATACCTTAAAGTGGTTAAGATAGATGGGGTGTCTCATACTTCAATACTTAAGGATGAAGTTGCACTAAATGAAATAGTAGGTGAGATTACTTCAATTAATTCTCATGCTGAGCTCGGTTTAAGTAATTTGTTTTCGGGGTAA

Predicted protein sequences of Glyma06g05040

Limit To All Plant Sequences

>Glyma06g05040.1   sequence type=predicted peptide   gene model=Glyma06g05040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKEQEEGLKIEVATLTVTVVVVMLSLLCTCGASNLDPLILIPGNGGNQLEARLTNQYKPSTFICESWYPLIKKKNGWFRLWFDSSVILAPFTQCFAERMTLHYHQELDDYFNTPGVETRVPHFGSTNSLLYLNPRLKHITGYMAPLVDSLQKLGYADGETLFGAPYDFRYGLAAEGHPSQVGSKFLKDLKNLIEEASNSNNGKPVILLSHSLGGLFVLQLLNRNPPSWRKKFIKHFIALSAPWGGAIDEMYTFASGNTLGVPLVDPLLVRDEQRSSESNLWLLPNPKIFGPQKPIVITPNKTYSAHDMVDFLKDIGFPEGVYPYETRILPLIGNIKAPQVPITCIMGTGVGTLETLFYGKGDFDERPEISYGDGDGTVNLVSLLALQSLWKEEKNQYLKVVKIDGVSHTSILKDEVALNEIVGEITSINSHAELGLSNLFSG*

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