Glyma06g05030 - SoyBase

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Report for Sequence Feature Glyma06g05030

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3558639
stop:	3560098
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G58420	AT	Annotation by Michelle Graham. TAIR10: Uncharacterised conserved protein UCP031279 \| chr1:21707407-21707946 FORWARD LENGTH=179	SoyBase	E_val: 7.00E-21	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6TB21	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TB21_SOYBN	SoyBase	E_val: 7.00E-111	ISS
UniRef100_Q75KB0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q75KB0_ORYSJ	SoyBase	E_val: 9.00E-10	ISS

Expression Patterns of Glyma06g05030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05030

Paralog	Evidence	Comments
Glyma04g04940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g047600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g05030

Limit To All Plant Sequences

>Glyma06g05030.1   sequence type=CDS   gene model=Glyma06g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGAAGGGGAACAAGAAGAAGAACAAGCTGGTGTGGATGATAGCGACGCCGTTTAGGGTGTTGGGGAAAGCGAGGGACATGTACGTGAGCAGCATAACGAAGTGCGGTCACAACATGAATTACAGCAACCCCGTGGATGCTGCTGGCAGATTCCAGGCTTTGCCCAGGAGTTACAGTGCTGCCACGTCACGCTCCGACAACAACGAGGATTTCGCCGAACTTTTGAGAGCGGCTTCCGCCAGGACTTTGGGCAACATAATCGATGTAGATTTGGTTGTAAAACAGCAGGCCCAAACCCAGACCCGGCCCGTTTCCTCAAATGGGTTGCCCAAGTCGACGAGCGTTGGCATGGGCCGGATCGACGAGGACACGCCTTATGATTTGGGGGAAGGGGAAGTTCCCGTTGTGCCCAAAGCCTATCCAAGAAGTAGAAGCTATGCTGTTGGAAAGACAAGTGCTGTTTTGTAA

Predicted protein sequences of Glyma06g05030

Limit To All Plant Sequences

>Glyma06g05030.1   sequence type=predicted peptide   gene model=Glyma06g05030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKGNKKKNKLVWMIATPFRVLGKARDMYVSSITKCGHNMNYSNPVDAAGRFQALPRSYSAATSRSDNNEDFAELLRAASARTLGNIIDVDLVVKQQAQTQTRPVSSNGLPKSTSVGMGRIDEDTPYDLGEGEVPVVPKAYPRSRSYAVGKTSAVL*

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