Glyma06g05001 - SoyBase

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Report for Sequence Feature Glyma06g05001

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3534449
stop:	3538482
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g05001

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37680	AT	Annotation by Michelle Graham. TAIR10: heptahelical protein 4 \| chr4:17701231-17702568 FORWARD LENGTH=385	SoyBase	E_val: 0	ISS
GO:0009725	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG0748	KOG	Predicted membrane proteins, contain hemolysin III domain	JGI		ISS
PTHR20855	Panther	ADIPOR/PROGESTIN RECEPTOR-RELATED	JGI		ISS
PTHR20855:SF14	Panther	ADIPONECTIN RECEPTOR-RELATED	JGI		ISS
PF03006	PFAM	Haemolysin-III related	JGI		ISS
UniRef100_E4MWY5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-16-G24 n=1 Tax=Eutrema halophilum RepID=E4MWY5_THEHA	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339D3A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339D3A related cluster n=1 Tax=unknown RepID=UPI0002339D3A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g05001

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g05001 not represented in the dataset	Glyma06g05001 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g05001

Paralog	Evidence	Comments
Glyma04g04900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g05001 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g047200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g05001

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g05001

Limit To All Plant Sequences

>Glyma06g05001.2   sequence type=transcript   gene model=Glyma06g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGCAATGTCCTATGCCGGGACTGGGACACCATCTTCCGGTACCACCTTATCATCTTTTCCCTCCAATTATTGTCTCTTTCCTTTTCCCGGCAAATCAGTTTTTTTTATTCGGGTAAATCTTTATTTAGTCCCACCAAAATTTCAGAGATGACACCTGGTGCATATGACGGGTTGATTGCTACGCCCGAAAAAATCAATGATTTTGTTGATTGTGAAGATGAAAGAGCAAGTTCAAAGTTTCGGAAGGGAGTAAGACTATGGAGAAAACTAAAATATCAGCTTGTAGAATACAATTCACTGCCACCCTACATGAGGGACAACGAATTTATCTTGGGTTATTATCGAGCAGAGTGGCCATTGAAACAGATCTTCCTTAGCATTTTCTCAATTCATAATGAGACACTTAATGTATGGACGCATTTGATTGGGTTCTTCCTTTTTCTCTTTCTCACCATATACACAGCTAAGAGAGCTCCAATGATTGTGGATTTCAATTCTGTTCAACATTTGTCTGAAATGATAGGGAAAGCTGATTTAAATAAGATTCGTTTAGAGCTCTTGAAATGCCTGCCTTCACTGCCCAACATGCCCGAGATTCTCAAATTAAATGACTTGAGTACATCTCTTTATTCTTTGGACTTCTCCTCATTATCAGGTTGGGCTCTAGTGGAACTTCTCACCAATTGCTTGCCTGAGCAGTTTTCCCTAAATGGTCTGAAAGATGACATGAACATGGTATCCCCCTTAATGCAACCGATTACAAGGTGGCCTTTCTATGCCTTCTTAGGTGGGGCCATGTTCTGCTTGCTAGCCAGCAGCACATGCCACCTCCTTACTTGCCACTCACAGCGCCTTTCCTACATCATGCTCAGAATTGACTATGCTGGGATTGCTGCATTGATTGCAACTTCATTTTACCCTCCTGTGTATTACTCATTTATGTGCAACCCCTTTTTTTGCTACCTCTACTTAGGCTTCATAACATTAATGGGGATTGCTACTATTGTCTTCTCTCTTCTCCCATTTTTCCAAAAGTCCGAGTTCAGGAAGTACCGCGCTTCCCTCTTCTTTTTAATGGGATTTTCTGGTGTGGCGCCCATAATACATAAGTTGATATTGCACAAGCATCAACCTGAGGCCTTGCAAACTACTGGTTATGAGATACTAATGGGAGTTCTTTATGGTTTGGGAGCAGCAATCTATGTCACAAGGATACCAGAGAGGTGGATGCCTGGCAAGTTTGATATTGCTGGCCACAGTCACCAACTCTTTCATATCTTGGTTGTGGCAGGGGCATACACACACTATCATGATGGGTTGATCTATCTAAGATGGAGAGATTCTCAAGGTTGCTAGGTTGATATTAGTGAATCTTCATCAATATTAACTAAGATATCAATTGGATGGAAAGTGAATCAAATCAAGAAAATGATATTATTATCTAGCATATCCTACATTGTTCTTTGCTGTGTTGGATGTATGATCATACAAACCAAGGGGGGCTGAGGGCGGTGTCGTGGTTATGTTATGCCACGGTAGCCTGAGTTTGTGAAATTTTACATATACTACCCCATGCATGTGTGTTGTTGATGGGCCTCACAGAATAAAATTTTCCCACAACCAATTTAGTTGATGATCTTTTTTCCTTTCATAGATATATGTGTTTGGCCTAGCCACTTCTCATTAGAATTTCAGACTCCATCCAAGTCATGCAAGACCTGAGTGTCTAATCAATTTTCAAAAGAGCTTCACTTGATGCATTTCGTTGGATAGCTCTTGAACAAGATTAACAGATTAATGTTACTAACTTGGTGGTGCGTTGGTTTGCGCATGATGAAAAACTATTGTGTTGTATATGATATAGCAGGCACGTTGACTGTTGACAAATCTTTCATATAGAAATTAGTTTCTGTCCTTTGTGCTTACTGCTCAGTGCTCAATGCTCAATGCTTAGAGTCACATGTTGTGTCTGAGTCCTTAAGATGAGAAATAAAATACCTCACGTGAGACTATAATAAAATACCTTAATTGATAGT

Coding sequences of Glyma06g05001

Limit To All Plant Sequences

>Glyma06g05001.1   sequence type=CDS   gene model=Glyma06g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACCTGGTGCATATGACGGGTTGATTGCTACGCCCGAAAAAATCAATGATTTTGTTGATTGTGAAGATGAAAGAGCAAGTTCAAAGTTTCGGAAGGGAGTAAGACTATGGAGAAAACTAAAATATCAGCTTGTAGAATACAATTCACTGCCACCCTACATGAGGGACAACGAATTTATCTTGGGTTATTATCGAGCAGAGTGGCCATTGAAACAGATCTTCCTTAGCATTTTCTCAATTCATAATGAGACACTTAATGTATGGACGCATTTGATTGGGTTCTTCCTTTTTCTCTTTCTCACCATATACACAGCTAAGAGAGCTCCAATGATTGTGGATTTCAATTCTGTTCAACATTTGTCTGAAATGATAGGGAAAGCTGATTTAAATAAGATTCGTTTAGAGCTCTTGAAATGCCTGCCTTCACTGCCCAACATGCCCGAGATTCTCAAATTAAATGACTTGAGTACATCTCTTTATTCTTTGGACTTCTCCTCATTATCAGGTTGGGCTCTAGTGGAACTTCTCACCAATTGCTTGCCTGAGCAGTTTTCCCTAAATGGTCTGAAAGATGACATGAACATGGTATCCCCCTTAATGCAACCGATTACAAGGTGGCCTTTCTATGCCTTCTTAGGTGGGGCCATGTTCTGCTTGCTAGCCAGCAGCACATGCCACCTCCTTACTTGCCACTCACAGCGCCTTTCCTACATCATGCTCAGAATTGACTATGCTGGGATTGCTGCATTGATTGCAACTTCATTTTACCCTCCTGTGTATTACTCATTTATGTGCAACCCCTTTTTTTGCTACCTCTACTTAGGCTTCATAACATTAATGGGGATTGCTACTATTGTCTTCTCTCTTCTCCCATTTTTCCAAAAGTCCGAGTTCAGGAAGTACCGCGCTTCCCTCTTCTTTTTAATGGGATTTTCTGGTGTGGCGCCCATAATACATAAGTTGATATTGCACAAGCATCAACCTGAGGCCTTGCAAACTACTGGTTATGAGATACTAATGGGAGTTCTTTATGGTTTGGGAGCAGCAATCTATGTCACAAGGATACCAGAGAGGTGGATGCCTGGCAAGTTTGATATTGCTGGCCACAGTCACCAACTCTTTCATATCTTGGTTGTGGCAGGGGCATACACACACTATCATGATGGGTTGATCTATCTAAGATGGAGAGATTCTCAAGGTTGCTAG

>Glyma06g05001.2   sequence type=CDS   gene model=Glyma06g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACCTGGTGCATATGACGGGTTGATTGCTACGCCCGAAAAAATCAATGATTTTGTTGATTGTGAAGATGAAAGAGCAAGTTCAAAGTTTCGGAAGGGAGTAAGACTATGGAGAAAACTAAAATATCAGCTTGTAGAATACAATTCACTGCCACCCTACATGAGGGACAACGAATTTATCTTGGGTTATTATCGAGCAGAGTGGCCATTGAAACAGATCTTCCTTAGCATTTTCTCAATTCATAATGAGACACTTAATGTATGGACGCATTTGATTGGGTTCTTCCTTTTTCTCTTTCTCACCATATACACAGCTAAGAGAGCTCCAATGATTGTGGATTTCAATTCTGTTCAACATTTGTCTGAAATGATAGGGAAAGCTGATTTAAATAAGATTCGTTTAGAGCTCTTGAAATGCCTGCCTTCACTGCCCAACATGCCCGAGATTCTCAAATTAAATGACTTGAGTACATCTCTTTATTCTTTGGACTTCTCCTCATTATCAGGTTGGGCTCTAGTGGAACTTCTCACCAATTGCTTGCCTGAGCAGTTTTCCCTAAATGGTCTGAAAGATGACATGAACATGGTATCCCCCTTAATGCAACCGATTACAAGGTGGCCTTTCTATGCCTTCTTAGGTGGGGCCATGTTCTGCTTGCTAGCCAGCAGCACATGCCACCTCCTTACTTGCCACTCACAGCGCCTTTCCTACATCATGCTCAGAATTGACTATGCTGGGATTGCTGCATTGATTGCAACTTCATTTTACCCTCCTGTGTATTACTCATTTATGTGCAACCCCTTTTTTTGCTACCTCTACTTAGGCTTCATAACATTAATGGGGATTGCTACTATTGTCTTCTCTCTTCTCCCATTTTTCCAAAAGTCCGAGTTCAGGAAGTACCGCGCTTCCCTCTTCTTTTTAATGGGATTTTCTGGTGTGGCGCCCATAATACATAAGTTGATATTGCACAAGCATCAACCTGAGGCCTTGCAAACTACTGGTTATGAGATACTAATGGGAGTTCTTTATGGTTTGGGAGCAGCAATCTATGTCACAAGGATACCAGAGAGGTGGATGCCTGGCAAGTTTGATATTGCTGGCCACAGTCACCAACTCTTTCATATCTTGGTTGTGGCAGGGGCATACACACACTATCATGATGGGTTGATCTATCTAAGATGGAGAGATTCTCAAGGTTGCTAG

Predicted protein sequences of Glyma06g05001

Limit To All Plant Sequences

>Glyma06g05001.1   sequence type=predicted peptide   gene model=Glyma06g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPGAYDGLIATPEKINDFVDCEDERASSKFRKGVRLWRKLKYQLVEYNSLPPYMRDNEFILGYYRAEWPLKQIFLSIFSIHNETLNVWTHLIGFFLFLFLTIYTAKRAPMIVDFNSVQHLSEMIGKADLNKIRLELLKCLPSLPNMPEILKLNDLSTSLYSLDFSSLSGWALVELLTNCLPEQFSLNGLKDDMNMVSPLMQPITRWPFYAFLGGAMFCLLASSTCHLLTCHSQRLSYIMLRIDYAGIAALIATSFYPPVYYSFMCNPFFCYLYLGFITLMGIATIVFSLLPFFQKSEFRKYRASLFFLMGFSGVAPIIHKLILHKHQPEALQTTGYEILMGVLYGLGAAIYVTRIPERWMPGKFDIAGHSHQLFHILVVAGAYTHYHDGLIYLRWRDSQGC*

>Glyma06g05001.2   sequence type=predicted peptide   gene model=Glyma06g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPGAYDGLIATPEKINDFVDCEDERASSKFRKGVRLWRKLKYQLVEYNSLPPYMRDNEFILGYYRAEWPLKQIFLSIFSIHNETLNVWTHLIGFFLFLFLTIYTAKRAPMIVDFNSVQHLSEMIGKADLNKIRLELLKCLPSLPNMPEILKLNDLSTSLYSLDFSSLSGWALVELLTNCLPEQFSLNGLKDDMNMVSPLMQPITRWPFYAFLGGAMFCLLASSTCHLLTCHSQRLSYIMLRIDYAGIAALIATSFYPPVYYSFMCNPFFCYLYLGFITLMGIATIVFSLLPFFQKSEFRKYRASLFFLMGFSGVAPIIHKLILHKHQPEALQTTGYEILMGVLYGLGAAIYVTRIPERWMPGKFDIAGHSHQLFHILVVAGAYTHYHDGLIYLRWRDSQGC*

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