Glyma06g04980 - SoyBase

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Report for Sequence Feature Glyma06g04980

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3517866
stop:	3520476
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10200	AT	Annotation by Michelle Graham. TAIR10: GATA type zinc finger transcription factor family protein \| chr1:3346677-3347763 REVERSE LENGTH=190	SoyBase	E_val: 5.00E-117	ISS
GO:0051017	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament bundle assembly	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0015629	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: actin cytoskeleton	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0051015	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin filament binding	SoyBase	N/A	ISS
KOG1700	KOG	Regulatory protein MLP and related LIM proteins	JGI		ISS
PTHR24206	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24206:SF66	Panther		JGI		ISS
PTHR25901	Panther	FAMILY NOT NAMED	JGI		ISS
PF00412	PFAM	LIM domain	JGI		ISS
UniRef100_B7FH07	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor lim1 n=1 Tax=Medicago truncatula RepID=B7FH07_MEDTR	SoyBase	E_val: 5.00E-125	ISS
UniRef100_C6SYL2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYL2_SOYBN	SoyBase	E_val: 2.00E-142	ISS

Expression Patterns of Glyma06g04980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04980

Paralog	Evidence	Comments
Glyma04g04880	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g047000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g04980

Limit To All Plant Sequences

>Glyma06g04980.2   sequence type=transcript   gene model=Glyma06g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAAAACTGTAGGAGAAAATGCTAGTTAGGACTTAGGTGGTTAAAATATTGGACAAAATGATTGTCAACGACAGTATATTTGTTGGGGTGTCTGCTTTTTGTCTCCTGCCTCCTACATTTCACCACCCCCTTTATCCTTATCTCCTCTCTTCTTCATTTGTTCTGCTCTTCCCCTCTATTTAAAGCTCACACAAAGGGATCATATACCTTGGTTGCACTTTGGTAAGGTGAGAGAATAGGAAAAAGGGAAATATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTGACAGCAGATAACCGAGTGTACCATAAGGCTTGCTTCAGATGCCACACTTCGACCAACTGTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACCGGGGAAGAGAAACCTGCAGCAACCAAAGTCTCAAGTATGTTTGGTGGAACTAGAGATAAATGTGCCGGTTGTCAAAAAACAGTGTATCCCACTGAAAAGGTTACTGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCCAACTACATTGCACACGAGGGCAAACTCTACTGCAAGCACCACCACGTCCAACTGATCAAGGAGAAGGGTAATTTAAGCCAACTTGAAGGTGACCATGAGAAGAGTGCAGAGCAAGAGAAAATCAACGGTGAAGTAGTTGCAGCTGAGACATGAAATGAAATGAAATGAAATGCTTGAGTTATCACAGATGAATATTCCCTTCCTCAAGTTCCATATTTCTGTATCATGTGTTTATGCTATCTCTCCTGCTTTGCCAATATGGAGTCCATAATGCTCTTGAAAAATATGGTACTCCCTTTTTTTGTGGTTGGGGTGTGTGCAAATCCATCGTTTTGTTTTCTGTTGTTGTGAAGTTGTGGATTCTAAAAATGAGACTTAATGGCATGCAATTCTGAATATGTGATTCAGAAGCCAGTGCTACTGAATTTCTTTGAACTCTCTCTTTATTCATATTGATACATATACATACATCATCCTAAT

Coding sequences of Glyma06g04980

Limit To All Plant Sequences

>Glyma06g04980.1   sequence type=CDS   gene model=Glyma06g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTGACAGCAGATAACCGAGTGTACCATAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTTAGCAACTATAACTCTTTTGAGGGGGTTCTTTACTGCAGGCCACACTTCGACCAACTGTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACCGGGGAAGAGAAACCTGCAGCAACCAAAGTCTCAAGTATGTTTGGTGGAACTAGAGATAAATGTGCCGGTTGTCAAAAAACAGTGTATCCCACTGAAAAGGTTACTGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCCAACTACATTGCACACGAGGGCAAACTCTACTGCAAGCACCACCACGTCCAACTGATCAAGGAGAAGGGTAATTTAAGCCAACTTGAAGGTGACCATGAGAAGAGTGCAGAGCAAGAGAAAATCAACGGTGAAGTAGTTGCAGCTGAGACATGA

>Glyma06g04980.2   sequence type=CDS   gene model=Glyma06g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCACACTTCGACCAACTGTTCAAAAGAACTGGTAGTCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAAAAAACCGGGGAAGAGAAACCTGCAGCAACCAAAGTCTCAAGTATGTTTGGTGGAACTAGAGATAAATGTGCCGGTTGTCAAAAAACAGTGTATCCCACTGAAAAGGTTACTGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCCAACTACATTGCACACGAGGGCAAACTCTACTGCAAGCACCACCACGTCCAACTGATCAAGGAGAAGGGTAATTTAAGCCAACTTGAAGGTGACCATGAGAAGAGTGCAGAGCAAGAGAAAATCAACGGTGAAGTAGTTGCAGCTGAGACATGA

Predicted protein sequences of Glyma06g04980

Limit To All Plant Sequences

>Glyma06g04980.1   sequence type=predicted peptide   gene model=Glyma06g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKTGEEKPAATKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHEGKLYCKHHHVQLIKEKGNLSQLEGDHEKSAEQEKINGEVVAAET*

>Glyma06g04980.2   sequence type=predicted peptide   gene model=Glyma06g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPHFDQLFKRTGSLDKSFEGTPKIAKPEKTGEEKPAATKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHEGKLYCKHHHVQLIKEKGNLSQLEGDHEKSAEQEKINGEVVAAET*

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