Glyma06g04960 - SoyBase

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Report for Sequence Feature Glyma06g04960

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3508739
stop:	3509509
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G59590	AT	Annotation by Michelle Graham. TAIR10: ZCF37 \| chr1:21887860-21888495 FORWARD LENGTH=211	SoyBase	E_val: 1.00E-35	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
UniRef100_I1K869	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1K869_SOYBN	SoyBase	E_val: 8.00E-127	ISS
UniRef100_Q9SY64	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F14N23.10 n=2 Tax=Arabidopsis thaliana RepID=Q9SY64_ARATH	SoyBase	E_val: 5.00E-16	ISS

Expression Patterns of Glyma06g04960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04960

Paralog	Evidence	Comments
Glyma04g04860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g046800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04960

Limit To All Plant Sequences

>Glyma06g04960.2   sequence type=CDS   gene model=Glyma06g04960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAACCATTTTATTTGTGGCAGTTTCCATCACCAAGAAGAAGATGTACCATGTTCAAGCCCCAAGAAGTACTCCAGGAGAAAAGAAAGTAGGAATATTAACAAAAACCCATACTCCAATCGAGGCTTAGACAAGTTTTCTGCACTTTTGGCTGATCTTGACGAGAGAAGGCAAAAGGTTTACTCACAGATGAGTCCTCAGGACATATCTTTTGTTCGGTTTGCGTATTCCAGCAATGATGATTTCGTTCCCATAGTGGTCAAAGTGAAAAAAAATAATAAGGATCAGAAGAAGCACAAGAGTGAAGAACTCAAAGCAAGACACATAACATCTTTCTCGGAGCAATTGGAGAAATCTTCTGAAGAAACAACCTTGGAAGAAAGGAAGCAAAAACTCAATAAGTTGGAAGCTCATAAGAAGAAGAATTTGAGCTTTTCTTGGAACGTGTTGAAGAGACCATCTTTCTATGTGCCAGCGGTTGTGATGTTGATTTTGGTTTTTTTGGTTGTTCTTGGGAGATCGGTTGCTACACTTTGCACTTGTGTTGTGTGGTATGTGGTCCCCACATTGAGTGAATATTATGATAGTTCAAAACCAAGAAAGAAATCGATGATGATGAATACTAAGAAGAGAGATAATGTTAGGGGGTGGCTGAATGATGTGAAGATGGTGAATCCTGAAGATTTAGCTTCTCCAAGAAGTGGTGATTCCAAGGCTTATTCAAATGACAATAATTCAGGGAAACATGGCCACCAGAAAAGTTTGTGA

Predicted protein sequences of Glyma06g04960

Limit To All Plant Sequences

>Glyma06g04960.2   sequence type=predicted peptide   gene model=Glyma06g04960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNHFICGSFHHQEEDVPCSSPKKYSRRKESRNINKNPYSNRGLDKFSALLADLDERRQKVYSQMSPQDISFVRFAYSSNDDFVPIVVKVKKNNKDQKKHKSEELKARHITSFSEQLEKSSEETTLEERKQKLNKLEAHKKKNLSFSWNVLKRPSFYVPAVVMLILVFLVVLGRSVATLCTCVVWYVVPTLSEYYDSSKPRKKSMMMNTKKRDNVRGWLNDVKMVNPEDLASPRSGDSKAYSNDNNSGKHGHQKSL*

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