Glyma06g04955 - SoyBase

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Report for Sequence Feature Glyma06g04955

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3501347
stop:	3503758
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04955

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_UPI0002339FA0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339FA0 related cluster n=1 Tax=unknown RepID=UPI0002339FA0	SoyBase	E_val: 2.00E-38	ISS

Expression Patterns of Glyma06g04955

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g04955 not represented in the dataset	Glyma06g04955 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04955

Paralog	Evidence	Comments
Glyma04g04855	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04955 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g046700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04955

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g04955

Limit To All Plant Sequences

>Glyma06g04955.2   sequence type=transcript   gene model=Glyma06g04955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAATATAGAATCTTACTCACCATCATCCCCATCCATTCCAACGAAAAAGGGCAAGGTAGACAATTAAAAAACAGACGGAAAATACAGATTGTAGAGGCGTATAGGCCAGGGGAGAGAGGAAACAGAAAGAAAAAGAGAGAAAAAGAAAGAGATCATAGCATAGGGTGACAGAAAGAGAGAGGGGAAAGGGAGAGGGACGAAGCCATGGGGTTATGCTTTGGTTGCTTCGACGGAGGCAACAAGCGTATGACAAAAGAAGAAGAGCGATTGGCCTCTGAAGAAGCGCGTGCTAGAGCTGCTGAAGCCGCCCAGAAAAAGCAAGAGCAGCAAGGAGAGGCAAAGCAACCAGAAACGGTTAAGGAACCTGAAAACTCCAACAATGGCGAAGCGTTTGTAAAGGTTTAGGGATACAAGGGGGCTACTTGATTTTTGTGGCAGATGGGTTGAGGTTAGGCCAACTGTTTATTACATGTAAGTACTATGTATAGGTCCAGTCAAATCCTCTGCACGGCCAGCTTTCCTTGTTCCGGAGATGAACAAAGGGTCTTTACTACAACTGTAACATCGGTCAAATTTGTTGTTTTCCAGATCAGGAAATATTCTGCTTGATTGAAAAGAATTAGTGATGTAAAGGAAACAAGGATAAGTTGAGAATGTAGTTTGGTGTTTTTATTGCATGTGTTGGTAACTTGGTGATGAGAAAAAACTCGACTTCCGCAAAAATTGAACGCATCAACCAAATTACTTCGTCTTTTTTTTTTTTTTTTTTTGTGGGGTTGGGGGCTAAGAAGTAATTAAGAACATGGACTTGTTTTATGATTCTACCTTTGGTGAAATACGTGCTACATGCTGCCAGTAATATTTTGAGCTACAGAGAATATGACACAGAAATTAAACGCAATCAGAACAACTGTCACCTTGAATTTATGGTTTAGGGAAATGCGGTTGCCTTTTTGCATACTTATAAGAGTTAAATATGCCCTGTAACATGAAGCTTGCTTCTCTTTTTTTGTTCAATCATTTTTTTCCCCGGCTTCACACCGTCAATAATCCTTAGGACCAACGTTTAGACCTCTATGATATTTACTGAATAC

>Glyma06g04955.3   sequence type=transcript   gene model=Glyma06g04955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTAATATAGAATCTTACTCACCATCATCCCCATCCATTCCAACGAAAAAGGGCAAGGTAGACAATTAAAAAACAGACGGAAAATACAGATTGTAGAGGCGTATAGGCCAGGGGAGAGAGGAAACAGAAAGAAAAAGAGAGAAAAAGAAAGAGATCATAGCATAGGGTGACAGAAAGAGAGAGGGGAAAGGGAGAGGGACGAAGCCATGGGGTTATGCTTTGGTTGCTTCGACGGAGGCAACAAGCGTATGACAAAAGAAGAAGAGCGATTGGCCTCTGAAGAAGCGCGTGCTAGAGCTGCTGAAGCCGCCCAGAAAAAGCAAGAGCAGCAAGGAGAGGCAAAGCAACCAGAAACGGTTAAGGAACCTGAAAACTCCAACAATGGCGAAGCGTTTGTAAAGGTTTAGGGATACAAGGGGGCTACTTGATTTTTGTGGCAGATGGGTTGAGGTTAGGCCAACTGTTTATTACATTACTATGTATAGGTCCAGTCAAATCCTCTGCACGGCCAGCTTTCCTTGTTCCGGAGATGAACAAAGGGTCTTTACTACAACTGTAACATCGGTCAAATTTGTTGTTTTCCAGATCAGGAAATATTCTGCTTGATTGAAAAGAATTAGTGATGTAAAGGAAACAAGGATAAGTTGAGAATGTAGTTTGGTGTTTTTATTGCATGTGTTGGTAACTTGGTGATGAGAAAAAACTCGACTTCCGCAAAAATTGAACGCATCAACCAAATTACTTCGTCTTTTTTTTTTTTTTTTTTTGTGGGGTTGGGGGCTAAGAAGTAATTAAGAACATGGACTTGTTTTATGATTCTACCTTTGGTGAAATACGTGCTACATGCTGCCAGTAATATTTTGAGCTACAGAGAATATGACACAGAAATTAAACGCAATCAGAACAACTGTCACCTTGAATTTATGGTTTAGGGAAATGCGGTTGCCTTTTTGCATACTTATAAGAGTTAAATATGCCCTGTAACATGAAGCTTGCTTCTCTTTTTTTGTTCAATCATTTTTTTCCCCGGCTTCACACCGTCAATAATCCTTAGGACCAACGTTTAGACCTCTATGATATTTACTGAATAC

Coding sequences of Glyma06g04955

Limit To All Plant Sequences

>Glyma06g04955.1   sequence type=CDS   gene model=Glyma06g04955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTATGCTTTGGTTGCTTCGACGGAGGCAACAAGCGTATGACAAAAGAAGAAGAGCGATTGGCCTCTGAAGAAGCGCGTGCTAGAGCTGCTGAAGCCGCCCAGAAAAAGCAAGAGCAGCAAGGAGAGGCAAAGCAACCAGAAACGGTTAAGGAACCTGAAAACTCCAACAATGGCGAAGCGTTTGTAAAGGTTTAG

>Glyma06g04955.2   sequence type=CDS   gene model=Glyma06g04955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTATGCTTTGGTTGCTTCGACGGAGGCAACAAGCGTATGACAAAAGAAGAAGAGCGATTGGCCTCTGAAGAAGCGCGTGCTAGAGCTGCTGAAGCCGCCCAGAAAAAGCAAGAGCAGCAAGGAGAGGCAAAGCAACCAGAAACGGTTAAGGAACCTGAAAACTCCAACAATGGCGAAGCGTTTGTAAAGGTTTAG

>Glyma06g04955.3   sequence type=CDS   gene model=Glyma06g04955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTATGCTTTGGTTGCTTCGACGGAGGCAACAAGCGTATGACAAAAGAAGAAGAGCGATTGGCCTCTGAAGAAGCGCGTGCTAGAGCTGCTGAAGCCGCCCAGAAAAAGCAAGAGCAGCAAGGAGAGGCAAAGCAACCAGAAACGGTTAAGGAACCTGAAAACTCCAACAATGGCGAAGCGTTTGTAAAGGTTTAG

Predicted protein sequences of Glyma06g04955

Limit To All Plant Sequences

>Glyma06g04955.1   sequence type=predicted peptide   gene model=Glyma06g04955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLCFGCFDGGNKRMTKEEERLASEEARARAAEAAQKKQEQQGEAKQPETVKEPENSNNGEAFVKV*

>Glyma06g04955.2   sequence type=predicted peptide   gene model=Glyma06g04955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLCFGCFDGGNKRMTKEEERLASEEARARAAEAAQKKQEQQGEAKQPETVKEPENSNNGEAFVKV*

>Glyma06g04955.3   sequence type=predicted peptide   gene model=Glyma06g04955   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLCFGCFDGGNKRMTKEEERLASEEARARAAEAAQKKQEQQGEAKQPETVKEPENSNNGEAFVKV*

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