Glyma06g04950 - SoyBase

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Report for Sequence Feature Glyma06g04950

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3497165
stop:	3501265
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27460	AT	Annotation by Michelle Graham. TAIR10: no pollen germination related 1 \| chr1:9534977-9537424 FORWARD LENGTH=694	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
KOG4162	KOG	Predicted calmodulin-binding protein	JGI		ISS
PTHR23083	Panther	O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT	JGI		ISS
PTHR23083:SF174	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_B9R701	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9R701_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1K868	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K868_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04950

Paralog	Evidence	Comments
Glyma04g04850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g046600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g04950

Limit To All Plant Sequences

>Glyma06g04950.2   sequence type=transcript   gene model=Glyma06g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCAAGTCTAACCCTGGTTAGTCGTTACCAAATTTGTCAATTTCTTTACTCTTCTTTTTAAAAACTCAAATCAAAATATTTGAAGGCGAAATGTTCCAACTCTCATAGAATGTGAAAGAATCTACCAACATTCCATTGGCATTATTATTATTATCCCAATCAGAAAAAGAAGAAGAAAGAAATAAAGTTGATAGTATTTCAGATCTCAGAATGCGTTTGATGGAAATCATCGGAATCCGAGTTGGTTAGCATTGCTATTAAAGTATAACACACTGCAACACCGTGCCATTCTGAAGTTGAACGGCGGAGAAGAAGATGTTGTGCGCTTGTTCTTCCGGGGAGCAGTTCAAATTCGAAGAGCCGCCACACTCGCCGGAGTCCCTCGCCACCAGGGATTTCTCCGCCAGCGGACTCTCTTCCAGGACCGGAGAATGGGAACCTAAATTCGATGATACGCAAGTTGAAGAAGCTGAATCTACTCTTAAAGATGCTCTTTCCTTAAACTACGAGGAGGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAGAGAGGGAACTTTGATGCTGCACTTCAAGTGTTTCAAGGTATAGATATCAAGGGTTTGACCCCAAGAATGATCAAGGCTATTGCTGAAAGAACCAAGCAAAGAAAACTGCGTCCCAAGGCAGATATGGTGGTTCCGAATGTCATGTCATTGCATTCGGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAATCAAGATCATTGGAGGAACTTGGGCAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTTTGGATACGGTTGAATCTGCCCTTCCCAATGGAATGCCTGAGGGTATTGGTGAAGGTTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAGTTGTTTCCAAGCCTTTGGATCAAGGCAGGGTTTCTTGATGAAGCTGTCACTGCATATCGTCGTGCTCTTGTCAAGCCTTGGAATTTGGAGCCAAGAAAGTTGGCTGCTGTAGAAAAAGATTTAGCTATGATACTACTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCAGTTGCAGGTGTGGGGTAAAACAGCACCCAAGAGTAGTGCTGAAGAAGCAATACTTTTGCTATTAATACTCATGAGCAAGGTGGCAATTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACTTTTGCACTTTCAGTGACTGGGATGTTTGAGTTATTGGCAGATCATGTAGAGCAGATCCTTCCAGGTATTTATGGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATGATGGGGTAGCATTGAACCTTTTGAGGAAGGCTTGTGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGTTTGGAGCAAAACTCTGTTCCTTGGATCCTCACCATGCTCATGAAGGCATTAAATTTTCACGTGAAGTTATTGTTATAGCTAAGCAACAAAATGAACATTTTCTCAGTCAAGGTCATAAATTTCTTGGCATCTGCTACGGGGCTGCTGCTAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTGTGCTGCTGTAAATGGAAGTGATGACCTGGAAGCGATAGTCAGCCTCGGACTAGAAAATGCCATTCAAAGGAATCTGGATGCAGCTTACAACAATATAATGATGTACTCAGACATGACTGTTGGCAGTTCAAGAGGTTGGCAGCTATTAGCACTCATAATATCTGCACAGCAGCGGTTTAAGGATGCTGAAACTATAGTTGATTTTGCTTTAGATGATTCTGGGGGGATGGATCAACTTGAACTTCTAAGATTGAAAGCAGTGCTTCAAATTTCTCAGCAGCAACCCAAGGAAGCAATAGAGACATATAGGATCTTGCTAGCACTAATTCAAGCAAAAAAGGAGCTTTTGCTTCAAGATAAAAACATTGATCAAGAACAAGCATTCAGGCATGAGGCATTAACAGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATACAGATATTGGTTCCTTGCTTGATGCAAAAACTTGTGTTGACAAAGCCCGGTTGATAGAGTATTTCTCTCCAAGATGTTGGCATATTACAGGGATGTTGCTTGAAGCTCAATCATTATACAAAGAGGCATTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCGGTATCATTTCCACTGCAGAATTGTTGATGAAACTTGGTATGCAATCACTTCCGATTGTAAGAAGCTTTTTAATGAATGCTTTACGATTAGAACCTACAAACCATGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAACTGAAGCTTTCTGCTCCAGTACAAAAATTTAAATAATTTAGACTTTGGAAAAACAGCCGTACACTCATCCCACAATTACCATTGCTTGGTTATTGATTTGTTCAAAATGTATAGCTAAATCTAGCTACTGATCTGTAGATTTCCTTCATTCTGTTATATTTGGTATGTTCTTGCTAGTTTGCAAAGGGTGCCAACATAGTTAGAATGTCTTTTGCCTACTTGTGTGTTCATGTAAATTTTATAAAAAAAAAATTGTTGTTTCACAAGTAGAATTAATAGTGGACAGAAATGGTAAAAATGATGCCTTTATTTTTTATTGTTTCTGCTTTCGTG

Coding sequences of Glyma06g04950

Limit To All Plant Sequences

>Glyma06g04950.1   sequence type=CDS   gene model=Glyma06g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTGCGCTTGTTCTTCCGGGGAGCAGTTCAAATTCGAAGAGCCGCCACACTCGCCGGAGTCCCTCGCCACCAGGGATTTCTCCGCCAGCGGACTCTCTTCCAGGACCGGAGAATGGGAACCTAAATTCGATGATACGCAAGTTGAAGAAGCTGAATCTACTCTTAAAGATGCTCTTTCCTTAAACTACGAGGAGGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAGAGAGGGAACTTTGATGCTGCACTTCAAGTGTTTCAAGGTATAGATATCAAGGGTTTGACCCCAAGAATGATCAAGGCTATTGCTGAAAGAACCAAGCAAAGAAAACTGCGTCCCAAGGCAGATATGGTGGTTCCGAATGTCATGTCATTGCATTCGGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAATCAAGATCATTGGAGGAACTTGGGCAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTTTGGATACGGTTGAATCTGCCCTTCCCAATGGAATGCCTGAGGGTATTGGTGAAGGTTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAGTTGTTTCCAAGCCTTTGGATCAAGGCAGGGTTTCTTGATGAAGCTGTCACTGCATATCGTCGTGCTCTTGTCAAGCCTTGGAATTTGGAGCCAAGAAAGTTGGCTGCTGTAGAAAAAGATTTAGCTATGATACTACTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCAGTTGCAGGTGTGGGGTAAAACAGCACCCAAGAGTAGTGCTGAAGAAGCAATACTTTTGCTATTAATACTCATGAGCAAGGTGGCAATTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACTTTTGCACTTTCAGTGACTGGGATGTTTGAGTTATTGGCAGATCATGTAGAGCAGATCCTTCCAGGTATTTATGGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATGATGGGGTAGCATTGAACCTTTTGAGGAAGGCTTGTGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGTTTGGAGCAAAACTCTGTTCCTTGGATCCTCACCATGCTCATGAAGGCATTAAATTTTCACGTGAAGTTATTGTTATAGCTAAGCAACAAAATGAACATTTTCTCAGTCAAGGTCATAAATTTCTTGGCATCTGCTACGGGGCTGCTGCTAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTGTGCTGCTGTAAATGGAAGTGATGACCTGGAAGCGATAGTCAGCCTCGGACTAGAAAATGCCATTCAAAGGAATCTGGATGCAGCTTACAACAATATAATGATGTACTCAGACATGACTGTTGGCAGTTCAAGAGGTTGGCAGCTATTAGCACTCATAATATCTGCACAGCAGCGGTTTAAGGATGCTGAAACTATAGTTGATTTTGCTTTAGATGATTCTGGGGGGATGGATCAACTTGAACTTCTAAGATTGAAAGCAGTGCTTCAAATTTCTCAGCAGCAACCCAAGGAAGCAATAGAGACATATAGGATCTTGCTAGCACTAATTCAAGCAAAAAAGGAGCTTTTGCTTCAAGATAAAAACATTGATCAAGAACAAGCATTCAGGCATGAGGCATTAACAGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATACAGATATTGGTTCCTTGCTTGATGCAAAAACTTGTGTTGACAAAGCCCGGTTGATAGAGTATTTCTCTCCAAGATGTTGGCATATTACAGGGATGTTGCTTGAAGCTCAATCATTATACAAAGAGGCATTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCGGTATCATTTCCACTGCAGAATTGTTGATGAAACTTGGTATGCAATCACTTCCGATTGTAAGAAGCTTTTTAATGAATGCTTTACGATTAGAACCTACAAACCATGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAACTGAAGCTTTCTGCTCCAGTACAAAAATTTAAATAA

>Glyma06g04950.2   sequence type=CDS   gene model=Glyma06g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTGCGCTTGTTCTTCCGGGGAGCAGTTCAAATTCGAAGAGCCGCCACACTCGCCGGAGTCCCTCGCCACCAGGGATTTCTCCGCCAGCGGACTCTCTTCCAGGACCGGAGAATGGGAACCTAAATTCGATGATACGCAAGTTGAAGAAGCTGAATCTACTCTTAAAGATGCTCTTTCCTTAAACTACGAGGAGGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAGAGAGGGAACTTTGATGCTGCACTTCAAGTGTTTCAAGGTATAGATATCAAGGGTTTGACCCCAAGAATGATCAAGGCTATTGCTGAAAGAACCAAGCAAAGAAAACTGCGTCCCAAGGCAGATATGGTGGTTCCGAATGTCATGTCATTGCATTCGGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAATCAAGATCATTGGAGGAACTTGGGCAATGCATTGAGGCTGCAAAGGAGTGCAGAATAATTTTGGATACGGTTGAATCTGCCCTTCCCAATGGAATGCCTGAGGGTATTGGTGAAGGTTGTAAGTTGCAAGAGATGTTTCATAAAGCATTGGAGTTGTTTCCAAGCCTTTGGATCAAGGCAGGGTTTCTTGATGAAGCTGTCACTGCATATCGTCGTGCTCTTGTCAAGCCTTGGAATTTGGAGCCAAGAAAGTTGGCTGCTGTAGAAAAAGATTTAGCTATGATACTACTCTATGGTGGTGTTGAAGTAAGCCTACCCTCTCAGTTGCAGGTGTGGGGTAAAACAGCACCCAAGAGTAGTGCTGAAGAAGCAATACTTTTGCTATTAATACTCATGAGCAAGGTGGCAATTCGGGAAATAGACTGGGATGCTGAAATAATGGATCATCTTACTTTTGCACTTTCAGTGACTGGGATGTTTGAGTTATTGGCAGATCATGTAGAGCAGATCCTTCCAGGTATTTATGGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTGTGTTATAGTGCAGCAGGACATGATGGGGTAGCATTGAACCTTTTGAGGAAGGCTTGTGGCAGTTCTGAAGCAAACCATAGACCCCATTTTCCTTCATTTTTGTTTGGAGCAAAACTCTGTTCCTTGGATCCTCACCATGCTCATGAAGGCATTAAATTTTCACGTGAAGTTATTGTTATAGCTAAGCAACAAAATGAACATTTTCTCAGTCAAGGTCATAAATTTCTTGGCATCTGCTACGGGGCTGCTGCTAGAATTTCTGTACTGGATTCTGAAAGAAGTATATTTCAAAGAGAGTCTTTGGACTCTCTAAACTGTGCTGCTGTAAATGGAAGTGATGACCTGGAAGCGATAGTCAGCCTCGGACTAGAAAATGCCATTCAAAGGAATCTGGATGCAGCTTACAACAATATAATGATGTACTCAGACATGACTGTTGGCAGTTCAAGAGGTTGGCAGCTATTAGCACTCATAATATCTGCACAGCAGCGGTTTAAGGATGCTGAAACTATAGTTGATTTTGCTTTAGATGATTCTGGGGGGATGGATCAACTTGAACTTCTAAGATTGAAAGCAGTGCTTCAAATTTCTCAGCAGCAACCCAAGGAAGCAATAGAGACATATAGGATCTTGCTAGCACTAATTCAAGCAAAAAAGGAGCTTTTGCTTCAAGATAAAAACATTGATCAAGAACAAGCATTCAGGCATGAGGCATTAACAGAAAGGAAGTTGGAAATGGAAGCCTGGCAGGATTTGGCTACCATTTATACAGATATTGGTTCCTTGCTTGATGCAAAAACTTGTGTTGACAAAGCCCGGTTGATAGAGTATTTCTCTCCAAGATGTTGGCATATTACAGGGATGTTGCTTGAAGCTCAATCATTATACAAAGAGGCATTTGTTTCCTTTTCAGTATCATTGTCAATAGAACCAGATTACATTCCCGGTATCATTTCCACTGCAGAATTGTTGATGAAACTTGGTATGCAATCACTTCCGATTGTAAGAAGCTTTTTAATGAATGCTTTACGATTAGAACCTACAAACCATGATGCTTGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAGCAAGCAGCAGAGTTCTTTCAAGCTGCTTATGAACTGAAGCTTTCTGCTCCAGTACAAAAATTTAAATAA

Predicted protein sequences of Glyma06g04950

Limit To All Plant Sequences

>Glyma06g04950.1   sequence type=predicted peptide   gene model=Glyma06g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCACSSGEQFKFEEPPHSPESLATRDFSASGLSSRTGEWEPKFDDTQVEEAESTLKDALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMIKAIAERTKQRKLRPKADMVVPNVMSLHSVSLLLEAILLKSRSLEELGQCIEAAKECRIILDTVESALPNGMPEGIGEGCKLQEMFHKALELFPSLWIKAGFLDEAVTAYRRALVKPWNLEPRKLAAVEKDLAMILLYGGVEVSLPSQLQVWGKTAPKSSAEEAILLLLILMSKVAIREIDWDAEIMDHLTFALSVTGMFELLADHVEQILPGIYGRAERWYFLALCYSAAGHDGVALNLLRKACGSSEANHRPHFPSFLFGAKLCSLDPHHAHEGIKFSREVIVIAKQQNEHFLSQGHKFLGICYGAAARISVLDSERSIFQRESLDSLNCAAVNGSDDLEAIVSLGLENAIQRNLDAAYNNIMMYSDMTVGSSRGWQLLALIISAQQRFKDAETIVDFALDDSGGMDQLELLRLKAVLQISQQQPKEAIETYRILLALIQAKKELLLQDKNIDQEQAFRHEALTERKLEMEAWQDLATIYTDIGSLLDAKTCVDKARLIEYFSPRCWHITGMLLEAQSLYKEAFVSFSVSLSIEPDYIPGIISTAELLMKLGMQSLPIVRSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQKFK*

>Glyma06g04950.2   sequence type=predicted peptide   gene model=Glyma06g04950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCACSSGEQFKFEEPPHSPESLATRDFSASGLSSRTGEWEPKFDDTQVEEAESTLKDALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIKGLTPRMIKAIAERTKQRKLRPKADMVVPNVMSLHSVSLLLEAILLKSRSLEELGQCIEAAKECRIILDTVESALPNGMPEGIGEGCKLQEMFHKALELFPSLWIKAGFLDEAVTAYRRALVKPWNLEPRKLAAVEKDLAMILLYGGVEVSLPSQLQVWGKTAPKSSAEEAILLLLILMSKVAIREIDWDAEIMDHLTFALSVTGMFELLADHVEQILPGIYGRAERWYFLALCYSAAGHDGVALNLLRKACGSSEANHRPHFPSFLFGAKLCSLDPHHAHEGIKFSREVIVIAKQQNEHFLSQGHKFLGICYGAAARISVLDSERSIFQRESLDSLNCAAVNGSDDLEAIVSLGLENAIQRNLDAAYNNIMMYSDMTVGSSRGWQLLALIISAQQRFKDAETIVDFALDDSGGMDQLELLRLKAVLQISQQQPKEAIETYRILLALIQAKKELLLQDKNIDQEQAFRHEALTERKLEMEAWQDLATIYTDIGSLLDAKTCVDKARLIEYFSPRCWHITGMLLEAQSLYKEAFVSFSVSLSIEPDYIPGIISTAELLMKLGMQSLPIVRSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAAEFFQAAYELKLSAPVQKFK*

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