Report for Sequence Feature Glyma06g04920
Feature Type: gene_model
Chromosome: Gm06
Start: 3483182
stop: 3488458
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g04920
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G27760 AT
Annotation by Michelle Graham. TAIR10: interferon-related developmental regulator family protein / IFRD protein family | chr1:9668895-9671322 FORWARD LENGTH=441
SoyBase E_val: 0 ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
KOG2842
KOG
Interferon-related protein PC4 like
JGI ISS
PTHR12354 Panther
INTERFERON-RELATED DEVELOPMENTAL REGULATOR-RELATED
JGI ISS
PTHR12354:SF3 Panther
UNCHARACTERIZED
JGI ISS
PF04836 PFAM
Interferon-related protein conserved region
JGI ISS
PF05004 PFAM
Interferon-related developmental regulator (IFRD)
JGI ISS
UniRef100_I1K863 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K863_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9SFY3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: T22C5.21 n=1 Tax=Arabidopsis thaliana RepID=Q9SFY3_ARATH
SoyBase E_val: 2.00E-118 ISS
Expression Patterns of Glyma06g04920
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g04920
Paralog Evidence Comments
Glyma04g04830 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g04920 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g046300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g04920
Coding sequences of Glyma06g04920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g04920.1 sequence type=CDS gene model=Glyma06g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAAACGTAATTCTCAACGTAAAAGTGCTGCGATGTTCGATAGTGATGACGATAGTAGCGTGACTTCGTCGTCAACTGCTCGTTCTGATTTGATGTCGGTGTCTGGGGCTGAAGATGTTCAATTTGTTCAAGATTCCTTGCTCGACCAAGCTCTCGACGCATTAGATGAGAAAAGGGGTTCCACGAGGGAGAAAGCTTTGTCATCGATCATTGACGCTTTCAATAGCAACATGCAGCATGAGTTTGTGGAGAAGAAATTTGCTACCTTACTACATCAATGTCTTGCTTCAATAAAAAAGGGATCCAAAAAGGCATCTGCTAAGGAGATAGCTTTGGCATCTCATGCCATTGGTTGTTTGGCCTTGACTGTCGGATGCGGTGACAATGCCCGTGAGATATTTGAAGAATCCATTCGTCCTTTGGATGAATCTCTCACATCTAGGATAGATGTTTCAAAGACACCATCATTACTGGAGTGTTTGGCTATAATCACTTTTGTTGGAGGGAATGATCAAGAAGAAACAGAACGATCAATGGACATAATGTGGCGAGTGATTAATCCCAAATTAGGTTCTAATGTAGTTGCTGTCAAACCTCCTGCTTCATTAATTGCCAATGTGGTGTCTGCATGGTCTTTTCTCCTCTCTACTGTGAGCAATTTGAAGCTAAATTCAAAAAACTGGCAGAATTCAATATCCTATTTATCTAGTCTTCTAGACAAGGAAGATAGGTCTGTACGAATTGCTGCTGGTGAAGCACTAGCTCTAATTTTTGAAATTGGAGTTATAGATAAATTTTCTGCTGAGTTAGACAGTGCAAGTGATACAACGCAAGGGAGTAAACCACTTGAAAGCTACATATTTTTACAAGGATTGAAAGGAAAGGTGATAAATCAATGCAAAAATCTTTCTACAGAGGCTGGTGGAAAAGGTTCTGCAAAGAAAGATCTTAATAGTCAGAGGAACTTGTTTCGAGATATCTTGGATTTTTTTGAGTATGGTTACTCCCCGGATATTTCAATGAAGATTGGTGGTGATTCCCTGCAGGCATCATCATGGTCTGAAATGATGCAGTTGAATTTTATCAAGCATTTTCTTGGGGGAGGATTCATCAAGCATATGCAGGAAAATGAGTTCCTACATGAAGTCTTTGGTTTCTCACCGAAGAGAAAGTATCTTAATACCAACGAACACAGAATGTCTGGTGGTGAAAAGAGAATGTTTAAGTCTCCAAATTCGTTTTTGAACAAGGCTAGGACGCAATCACTTAATAAGCAGCGGATATTATCTGAGGGCAGAAACTTCGGCCACTACGCTGTCGGTGTGGTTGACGAGGAGGCATGA
Predicted protein sequences of Glyma06g04920
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g04920.1 sequence type=predicted peptide gene model=Glyma06g04920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGKRNSQRKSAAMFDSDDDSSVTSSSTARSDLMSVSGAEDVQFVQDSLLDQALDALDEKRGSTREKALSSIIDAFNSNMQHEFVEKKFATLLHQCLASIKKGSKKASAKEIALASHAIGCLALTVGCGDNAREIFEESIRPLDESLTSRIDVSKTPSLLECLAIITFVGGNDQEETERSMDIMWRVINPKLGSNVVAVKPPASLIANVVSAWSFLLSTVSNLKLNSKNWQNSISYLSSLLDKEDRSVRIAAGEALALIFEIGVIDKFSAELDSASDTTQGSKPLESYIFLQGLKGKVINQCKNLSTEAGGKGSAKKDLNSQRNLFRDILDFFEYGYSPDISMKIGGDSLQASSWSEMMQLNFIKHFLGGGFIKHMQENEFLHEVFGFSPKRKYLNTNEHRMSGGEKRMFKSPNSFLNKARTQSLNKQRILSEGRNFGHYAVGVVDEEA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
