Glyma06g04910 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g04910

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3469012
stop:	3471612
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37630	AT	Annotation by Michelle Graham. TAIR10: cyclin d5;1 \| chr4:17679497-17680788 FORWARD LENGTH=321	SoyBase	E_val: 2.00E-48	ISS
GO:0000278	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0045736	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004693	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0656	KOG	G1/S-specific cyclin D	JGI		ISS
KOG0794	KOG	CDK8 kinase-activating protein cyclin C	JGI		ISS
PTHR10177	Panther	CYCLINS	JGI		ISS
PTHR10177:SF76	Panther	CYCLIN-D	JGI		ISS
PF00134	PFAM	Cyclin, N-terminal domain	JGI		ISS
PF02984	PFAM	Cyclin, C-terminal domain	JGI		ISS
UniRef100_D3YBB0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclin d n=1 Tax=Trifolium repens RepID=D3YBB0_TRIRP	SoyBase	E_val: 3.00E-111	ISS
UniRef100_UPI0002339D36	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339D36 related cluster n=1 Tax=unknown RepID=UPI0002339D36	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04910

Paralog	Evidence	Comments
Glyma04g04821	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g046200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g04910

Limit To All Plant Sequences

>Glyma06g04910.3   sequence type=transcript   gene model=Glyma06g04910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAAAGACTTTATGGGTCAAACTGAAATCAAAACCTCATCATCCTCAACACTCACCCAACCCAACATCACACCTTGAACACCGAAACATAACAACAACAACACACTCACACACTCACTCACTTCCTCGGAACTAAAATCTCGCCTTTTTCTCACTAACCCAAGACAACATAATCAATGTTCCCAAACGGTAACCGCTACAACAGCTCTACGATTTCCACCTAAACTCTTCATAGCCTCATCTTCCTTAATTCTAAACTCTTTGGTTAAGTGGCTTAATCATATATCACATAAAACACTTCAGAGACGACTTTTTTCGCATTGTTGTTCAATTGGGTAGCCGAATCTCTTTTCGAAAATCTTTTTTTTTTCCTTTCAAATGGATGATGATCTTTCGTCCAGCCTTCTGTGCCATGAAAACGAAACGTGTTTGAAAGAAGGAGGTGAAGAGTTAGAATACCAATTCGCAGGATCACAGCATGATTGTGGGGTTTCGGAGGATGAACGTGTGGGAATTTTGATCGAGAGAGAGATCGTTCTTGGGTTCAAAAGGGACGAAAGTATGGTGTTTGGGGACTGGGTGAAACGCGCACGCGTGGAAGCAATCAATTGGATTCTCAAAAGTGAAAAGAGTTGGGCAATTCGGTTGCTGTCAATTGCATGCCTCTCTCTGGCTGCAAAGATGGAGGAATGCAATGTGCCAGGGCTATCAGAGTTCAAATTGGATGATTATTCCTTTGAGGGAAAAGTGATTCAGAAAATGGAGCTTTTGGTACTCAGCACGTTGGAGTGGGAAATGGGTATCATAACTCCCTTTGATTTTCTTTCCTATTTCATCACAAAGTTCTGCAAAGAATCCCCGCCAAGTCCTATTTTTTACAAGACCATGCAACTCATCTTCACCACAATGAAAGAGGTCAATTTAATGGATCACAAACCATCAGTTATTGCTGTGGCAGCTACTTTGGTGGCAATGGATCAACAATTAACGAGAGACGCGGTGGAGTTGAAGATGAGTTCAATTCCACAACATAGGCTTCTAGAATCTAAAGATGTATTTGAGTACTACAATCTAATTCAAAGATTATACGAGGAGAATACCAAAAGCGACACCCATACGCCAATTGAGATGACAGAGAGCTCTCGAGTTACTTCTTCTGCTGCAATGACAAAGAGAAGACGACTCACATTCAGTGATGATGAAGGAAGTAGTCATGGGAAGGGACCACCGGGCTAGCAAAAATCCAAAATTCTGAATTTTTTTAAGGTCTAATTATTTTTGTGAAGATTATGTATTGATATTCTTGATTACTTCTAGCATGAATCTCACCCAGAGACAGAGGGAGTGAAAGTGAAACTCACATGAGAAAGGTATTGATTGTTACTGCAAGAAAAATTGTTTAGCATAGATTTGGTGTCTTCCTCAGAAACCAGCAAGGAAAAGAGGAACAAAGGAGGAAGCAAGAATAAAGATACATATGTTGGTTGAGATGTTCAAATCAAATCACAACAAAAGCCAGGTGCTGATCTAGAAAGCTGCAGAATCAGAAACAGCAAGTTAGGACTTAGCCCATTGTTTTTTCCTTTTTTACCCTTATATTTTCTTGTGATTTTGCTCCATTCTTACTATTATTATTTTTTCTTTTGTTATTTCGGTTAATCTTTTTAACCTTCATTGCCTATTCACAACGGATTTTGTTTTGTCATATATCTCTTGCAACCTACCTTTTGATGGATGCTTGGGATGCTTTAGTAAGTAATGTCTTCAAAAAGGGTGAAAGGGGGGGCGAGAAAACTCTGTTGGTGTGTTTGGGTGCATGCATGGTCTGTGTTGCATAATGGCCATCACAAAAGTTTTGTAAGGATGAATGTGATTGGATTTGTTTGAATGTCTGAGACTGCCTTTAACGGCGGGACCTACCCTTTTGCCTGCAAATTTTACATGGCTTCGTTGTGTTCTTGGGTCATGAAACCCAATATAATAGCGTTTGTGGAATCAAAAAGCATTTCTATGTTGATTATGCTTTTTGAAGCGAT

>Glyma06g04910.4   sequence type=transcript   gene model=Glyma06g04910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAAAGACTTTATGGGTCAAACTGAAATCAAAACCTCATCATCCTCAACACTCACCCAACCCAACATCACACCTTGAACACCGAAACATAACAACAACAACACACTCACACACTCACTCACTTCCTCGGAACTAAAATCTCGCCTTTTTCTCACTAACCCAAGACAACATAATCAATGTTCCCAAACGGTAACCGCTACAACAGCTCTACGATTTCCACCTAAACTCTTCATAGCCTCATCTTCCTTAATTCTAAACTCTTTGGTTAAGTGGCTTAATCATATATCACATAAAACACTTCAGAGACGACTTTTTTCGCATTGTTGTTCAATTGGGTAGCCGAATCTCTTTTCGAAAATCTTTTTTTTTTCCTTTCAAATGGATGATGATCTTTCGTCCAGCCTTCTGTGCCATGAAAACGAAACGTGTTTGAAAGAAGGAGGTGAAGAGTTAGAATACCAATTCGCAGGATCACAGCATGATTGTGGGGTTTCGGAGGATGAACGTGTGGGAATTTTGATCGAGAGAGAGATCGTTCTTGGGTTCAAAAGGGACGAAAGTATGGTGTTTGGGGACTGGGTGAAACGCGCACGCGTGGAAGCAATCAATTGGATTCTCAAAACAAGAGCAACATTGGGTTTTCGCTTCGAAACGGCCTATTTGTCAGTCACATACTTCGATCGATTTCTTTCCAGACGTTCCATTGATAGTGAAAAGAGTTGGGCAATTCGGTTGCTGTCAATTGCATGCCTCTCTCTGGCTGCAAAGATGGAGGAATGCAATGTGCCAGGGCTATCAGAGTTCAAATTGGATGATTATTCCTTTGAGGGAAAAGTGATTCAGAAAATGGAGCTTTTGGTACTCAGCACGTTGGAGTGGGAAATGGGTATCATAACTCCCTTTGATTTTCTTTCCTATTTCATCACAAAGTTCTGCAAAGAATCCCCGCCAAGTCCTATTTTTTACAAGACCATGCAACTCATCTTCACCACAATGAAAGCATTATTTGTCCCCTTGTGCAGAGGTCAATTTAATGGATCACAAACCATCAGTTATTGCTGTGGCAGCTACTTTGGTGGCAATGGATCAACAATTAACGAGAGACGCGGTGGAGTTGAAGATGAGTTCAATTCCACAACATAGGCTTCTAGAATCTAAAGATGTATTTGAGTACTACAATCTAATTCAAAGATTATACGAGGAGAATACCAAAAGCGACACCCATACGCCAATTGAGATGACAGAGAGCTCTCGAGTTACTTCTTCTGCTGCAATGACAAAGAGAAGACGACTCACATTCAGTGATGATGAAGGAAGTAGTCATGGGAAGGGACCACCGGGCTAGCAAAAATCCAAAATTCTGAATTTTTTTAAGGTCTAATTATTTTTGTGAAGATTATGTATTGATATTCTTGATTACTTCTAGCATGAATCTCACCCAGAGACAGAGGGAGTGAAAGTGAAACTCACATGAGAAAGGTATTGATTGTTACTGCAAGAAAAATTGTTTAGCATAGATTTGGTGTCTTCCTCAGAAACCAGCAAGGAAAAGAGGAACAAAGGAGGAAGCAAGAATAAAGATACATATGTTGGTTGAGATGTTCAAATCAAATCACAACAAAAGCCAGGTGCTGATCTAGAAAGCTGCAGAATCAGAAACAGCAAGTTAGGACTTAGCCCATTGTTTTTTCCTTTTTTACCCTTATATTTTCTTGTGATTTTGCTCCATTCTTACTATTATTATTTTTTCTTTTGTTATTTCGGTTAATCTTTTTAACCTTCATTGCCTATTCACAACGGATTTTGTTTTGTCATATATCTCTTGCAACCTACCTTTTGATGGATGCTTGGGATGCTTTAGTAAGTAATGTCTTCAAAAAGGGTGAAAGGGGGGGCGAGAAAACTCTGTTGGTGTGTTTGGGTGCATGCATGGTCTGTGTTGCATAATGGCCATCACAAAAGTTTTGTAAGGATGAATGTGATTGGATTTGTTTGAATGTCTGAGACTGCCTTTAACGGCGGGACCTACCCTTTTGCCTGCAAATTTTACATGGCTTCGTTGTGTTCTTGGGTCATGAAACCCAATATAATAGCGTTTGTGGAATCAAAAAGCATTTCTATGTTGATTATGCTTTTTGAAGCGAT

Coding sequences of Glyma06g04910

Limit To All Plant Sequences

>Glyma06g04910.2   sequence type=CDS   gene model=Glyma06g04910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGATCTTTCGTCCAGCCTTCTGTGCCATGAAAACGAAACGTGTTTGAAAGAAGGAGGTGAAGAGTTAGAATACCAATTCGCAGGATCACAGCATGATTGTGGGGTTTCGGAGGATGAACGTGTGGGAATTTTGATCGAGAGAGAGATCGTTCTTGGGTTCAAAAGGGACGAAAGTATGGTGTTTGGGGACTGGGTGAAACGCGCACGCGTGGAAGCAATCAATTGGATTCTCAAAACAAGAGCAACATTGGGTTTTCGCTTCGAAACGGCCTATTTGTCAGTCACATACTTCGATCGATTTCTTTCCAGACGTTCCATTGATAGTGAAAAGAGTTGGGCAATTCGGTTGCTGTCAATTGCATGCCTCTCTCTGGCTGCAAAGATGGAGGAATGCAATGTGCCAGGGCTATCAGAGTTCAAATTGGATGATTATTCCTTTGAGGGAAAAGTGATTCAGAAAATGGAGCTTTTGGTACTCAGCACGTTGGAGTGGGAAATGGGTATCATAACTCCCTTTGATTTTCTTTCCTATTTCATCACAAAGTTCTGCAAAGAATCCCCGCCAAGTCCTATTTTTTACAAGACCATGCAACTCATCTTCACCACAATGAAAGAGGTCAATTTAATGGATCACAAACCATCAGTTATTGCTGTGGCAGCTACTTTGGTGGCAATGGATCAACAATTAACGAGAGACGCGGTGGAGTTGAAGATGAGTTCAATTCCACAACATAGGCTTCTAGAATCTAAAGATGTATTTGAGTACTACAATCTAATTCAAAGATTATACGAGGAGAATACCAAAAGCGACACCCATACGCCAATTGAGATGACAGAGAGCTCTCGAGTTACTTCTTCTGCTGCAATGACAAAGAGAAGACGACTCACATTCAGTGATGATGAAGGAAGTAGTCATGGGAAGGGACCACCGGGCTAG

>Glyma06g04910.3   sequence type=CDS   gene model=Glyma06g04910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGATCTTTCGTCCAGCCTTCTGTGCCATGAAAACGAAACGTGTTTGAAAGAAGGAGGTGAAGAGTTAGAATACCAATTCGCAGGATCACAGCATGATTGTGGGGTTTCGGAGGATGAACGTGTGGGAATTTTGATCGAGAGAGAGATCGTTCTTGGGTTCAAAAGGGACGAAAGTATGGTGTTTGGGGACTGGGTGAAACGCGCACGCGTGGAAGCAATCAATTGGATTCTCAAAAGTGAAAAGAGTTGGGCAATTCGGTTGCTGTCAATTGCATGCCTCTCTCTGGCTGCAAAGATGGAGGAATGCAATGTGCCAGGGCTATCAGAGTTCAAATTGGATGATTATTCCTTTGAGGGAAAAGTGATTCAGAAAATGGAGCTTTTGGTACTCAGCACGTTGGAGTGGGAAATGGGTATCATAACTCCCTTTGATTTTCTTTCCTATTTCATCACAAAGTTCTGCAAAGAATCCCCGCCAAGTCCTATTTTTTACAAGACCATGCAACTCATCTTCACCACAATGAAAGAGGTCAATTTAATGGATCACAAACCATCAGTTATTGCTGTGGCAGCTACTTTGGTGGCAATGGATCAACAATTAACGAGAGACGCGGTGGAGTTGAAGATGAGTTCAATTCCACAACATAGGCTTCTAGAATCTAAAGATGTATTTGAGTACTACAATCTAATTCAAAGATTATACGAGGAGAATACCAAAAGCGACACCCATACGCCAATTGAGATGACAGAGAGCTCTCGAGTTACTTCTTCTGCTGCAATGACAAAGAGAAGACGACTCACATTCAGTGATGATGAAGGAAGTAGTCATGGGAAGGGACCACCGGGCTAG

>Glyma06g04910.4   sequence type=CDS   gene model=Glyma06g04910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGATCTTTCGTCCAGCCTTCTGTGCCATGAAAACGAAACGTGTTTGAAAGAAGGAGGTGAAGAGTTAGAATACCAATTCGCAGGATCACAGCATGATTGTGGGGTTTCGGAGGATGAACGTGTGGGAATTTTGATCGAGAGAGAGATCGTTCTTGGGTTCAAAAGGGACGAAAGTATGGTGTTTGGGGACTGGGTGAAACGCGCACGCGTGGAAGCAATCAATTGGATTCTCAAAACAAGAGCAACATTGGGTTTTCGCTTCGAAACGGCCTATTTGTCAGTCACATACTTCGATCGATTTCTTTCCAGACGTTCCATTGATAGTGAAAAGAGTTGGGCAATTCGGTTGCTGTCAATTGCATGCCTCTCTCTGGCTGCAAAGATGGAGGAATGCAATGTGCCAGGGCTATCAGAGTTCAAATTGGATGATTATTCCTTTGAGGGAAAAGTGATTCAGAAAATGGAGCTTTTGGTACTCAGCACGTTGGAGTGGGAAATGGGTATCATAACTCCCTTTGATTTTCTTTCCTATTTCATCACAAAGTTCTGCAAAGAATCCCCGCCAAGTCCTATTTTTTACAAGACCATGCAACTCATCTTCACCACAATGAAAGCATTATTTGTCCCCTTGTGCAGAGGTCAATTTAATGGATCACAAACCATCAGTTATTGCTGTGGCAGCTACTTTGGTGGCAATGGATCAACAATTAACGAGAGACGCGGTGGAGTTGAAGATGAGTTCAATTCCACAACATAG

Predicted protein sequences of Glyma06g04910

Limit To All Plant Sequences

>Glyma06g04910.2   sequence type=predicted peptide   gene model=Glyma06g04910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDDLSSSLLCHENETCLKEGGEELEYQFAGSQHDCGVSEDERVGILIEREIVLGFKRDESMVFGDWVKRARVEAINWILKTRATLGFRFETAYLSVTYFDRFLSRRSIDSEKSWAIRLLSIACLSLAAKMEECNVPGLSEFKLDDYSFEGKVIQKMELLVLSTLEWEMGIITPFDFLSYFITKFCKESPPSPIFYKTMQLIFTTMKEVNLMDHKPSVIAVAATLVAMDQQLTRDAVELKMSSIPQHRLLESKDVFEYYNLIQRLYEENTKSDTHTPIEMTESSRVTSSAAMTKRRRLTFSDDEGSSHGKGPPG*

>Glyma06g04910.3   sequence type=predicted peptide   gene model=Glyma06g04910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDDLSSSLLCHENETCLKEGGEELEYQFAGSQHDCGVSEDERVGILIEREIVLGFKRDESMVFGDWVKRARVEAINWILKSEKSWAIRLLSIACLSLAAKMEECNVPGLSEFKLDDYSFEGKVIQKMELLVLSTLEWEMGIITPFDFLSYFITKFCKESPPSPIFYKTMQLIFTTMKEVNLMDHKPSVIAVAATLVAMDQQLTRDAVELKMSSIPQHRLLESKDVFEYYNLIQRLYEENTKSDTHTPIEMTESSRVTSSAAMTKRRRLTFSDDEGSSHGKGPPG*

>Glyma06g04910.4   sequence type=predicted peptide   gene model=Glyma06g04910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDDLSSSLLCHENETCLKEGGEELEYQFAGSQHDCGVSEDERVGILIEREIVLGFKRDESMVFGDWVKRARVEAINWILKTRATLGFRFETAYLSVTYFDRFLSRRSIDSEKSWAIRLLSIACLSLAAKMEECNVPGLSEFKLDDYSFEGKVIQKMELLVLSTLEWEMGIITPFDFLSYFITKFCKESPPSPIFYKTMQLIFTTMKALFVPLCRGQFNGSQTISYCCGSYFGGNGSTINERRGGVEDEFNSTT*

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