Report for Sequence Feature Glyma06g04900
Feature Type: gene_model
Chromosome: Gm06
Start: 3460244
stop: 3467751
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g04900
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G27770 AT
Annotation by Michelle Graham. TAIR10: autoinhibited Ca2+-ATPase 1 | chr1:9671912-9676010 REVERSE LENGTH=1020
SoyBase E_val: 0 ISS
GO:0006754 GO-bp
Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process
SoyBase N/A ISS
GO:0006812 GO-bp
Annotation by Michelle Graham. GO Biological Process: cation transport
SoyBase N/A ISS
GO:0006816 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium ion transport
SoyBase N/A ISS
GO:0006882 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular zinc ion homeostasis
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009624 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nematode
SoyBase N/A ISS
GO:0070588 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium ion transmembrane transport
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009706 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast inner membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0005262 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calcium channel activity
SoyBase N/A ISS
GO:0005388 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calcium-transporting ATPase activity
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0015662 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
SoyBase N/A ISS
GO:0046872 GO-mf
Annotation by Michelle Graham. GO Molecular Function: metal ion binding
SoyBase N/A ISS
KOG0204
KOG
Calcium transporting ATPase
JGI ISS
PTHR24093 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24093:SF73 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00122 PFAM
E1-E2 ATPase
JGI ISS
PF00689 PFAM
Cation transporting ATPase, C-terminus
JGI ISS
PF00690 PFAM
Cation transporter/ATPase, N-terminus
JGI ISS
PF00702 PFAM
haloacid dehalogenase-like hydrolase
JGI ISS
PF12515 PFAM
Ca2+-ATPase N terminal autoinhibitory domain
JGI ISS
UniRef100_I1K861 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K861_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9FVE7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Plasma membrane Ca2+-ATPase n=1 Tax=Glycine max RepID=Q9FVE7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g04900
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g04900
Paralog Evidence Comments
Glyma04g04810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g04900 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g046000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g04900
Coding sequences of Glyma06g04900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g04900.1 sequence type=CDS gene model=Glyma06g04900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGATTTACCTGAGTGAGAATTTCGGAGATGTGAAGCCAAAGAACTCATCGGAAGAAGCGCTTCAGAGATGGAGGAAGGCTTGTTGGCTCGTTAAGAATCACAAGAGGAGGTTCCGTTTCACTGCTAATCTCTCCAAGAGATTCGAAGCTGAGGCTATTAGACGCTCCAATCAGGAGAAATTCAGAGTTGCAGTGTTGGTTTCACAAGCTGCTATTCAGTTTATCCACGGTCTAAATTTGTCGAGTGAGTACACTGTACCAGAAGAAGTTAAAGCAGCAGGCTTTGAAATTTGTGCTGATGAGCTGGGATCAATTGTTGAGGGACGTGATTCGAAGAAGTTGAAAAGTCATGGTGGGGTTGATGCTATCACAAACAAACTCAATACCTCAGTTGATGATGGTATATCAACATCTGAGCACTTGGTGAATCAGAGAAAAGAAATTTATGGAGTTAATAAATTCGCTGAAAGTCCAGCCCGTGGATTTTGGGTTTATGTATGGGAATCCCTTCAAGATACAACCCTCATGATACTTGCTGTCTGTGCCTTGGTCTCTTTGGTGGTTGGTATAATAATGGAAGGGTGGCCCAAGGGTGCACAGGATGGAATTGGTATTGTTGCAAGCATATTGCTTGTAGTGTTCGTCACTGCCACAAGTGACTACAGACAATCACTGCAGTTTAAGGATCTGGATAAAGAGAAGAAGAAAATTACAGTTCAGGTCACGAGAAATAGTTGTAGGCAGAAGCTTTCAATGTATGATCTGCTTCCTGGTGATATTGTCCATCTAAATATTGGAGATCAGGTCCCTGCCGATGGCCTTTTTGTGTCTGGTTTCTCTGTGTTAATAAATGAATCAAGCTTGACAGGAGAAAGTGAACCGGTGAATGTCAGTGAACTTAATCCTTTTCTTCTGTCTGGAACCAAAGTTCAAGATGGATCATGCAAGATGCTTGTGACTACTGTTGGAATGAGGACCCAGTGGGGTAAACTAATGGCTACTCTAAGTGAAGGGGGAGATGATGAAACACCTTTGCAGGTAAAGCTCAATGGTGTTGCTACCATTATTGGGAAAATAGGCCTCTTTTTCGCAGTTGTGACCTTTTCTGTGTTGGTCCAAGGGCTTTTTAGCCGCAAGCTGCGAGAGGGATCCCAATGGATGTGGTCTGGTGACGATGCAATGCAAATTGTGGAATTCTTTGCTATTGCTGTTACTATTGTTGTTGTGGCTGTTCCTGAAGGTTTACCTTTAGCTGTAACATTAAGCCTTGCTTTTGCAATGAAAAAGATGATGAATGATAAGGCACTTGTTCGTCACTTGGCTGCTTGTGAGACAATGGGATCTGCCACTACTATCTGCAGTGACAAGACTGGCACACTAACTACTAACCATATGACTGTTGTAAAAGCTTATATATGTGGGAAGATTAAAGAAGTAAATGGTTCTAAGGTCTACTCTGATTTCTCATCTGATATTCATGATTCTGCTCTAGCAATTCTACTTGAATCAATATTTAACAACACTGGAGGAGAAGTTGTCAAAAACAAAGATGAGAAGATTGAAATTCTAGGATCACCGACTGAGACTGCACTGTTGGAATTTGGGCTGTCACTTGGTGGTGATTTCCATAAGGAACGACAAAGGTCAAAACTTGTGAAAGTTGAGCCATTTAATTCTATAAAGAAGCGCATGGGGGTGGTTCTCCAGCTTCCTGATGGTGGTTTCAGAGCACATTGCAAAGGTGCCTCTGAAATAATTCTAGCTTCATGTGACAAAGTTGTGGACTCAAGTGGCGAGGTTGTTGCCCTCAATGAAGACTCCATAAATCACTTGAATAATATGATTGAAACATTTGCTGGTGAAGCTCTCCGAACACTTTGCCTTGCTTACTTGGATATTCATGATGAATTTTCTGTTGGAACTGCTATTCCTACTAGAGGTTACACTTGTATTGGAATTGTGGGTATTAAAGATCCAGTTCGCCCTGGTGTTCGAGAGTCAGTCGCCATTTGTAGGTCAGCTGGTATTGCTGTTAGGATGGTTACTGGAGACAACATAAATACAGCAAAGGCTATTGCTAGAGAATGTGGAATTTTAACAGATGGTATCGCAATTGAAGGCCCCGAGTTTCGTGAGAAGAGTGAGGAGGAGTTGCTTGATATCATTCCAAAAATTCAGGTAATGGCCCGATCTTCACCAATGGATAAGCATACCCTGGTGAAACACTTGAGGACAACATTTCAAGAGGTTGTTTCAGTAACTGGTGATGGTACAAATGATGCTCCAGCACTTCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTAGCAAAAGAAAGCGCTGATGTAATAATTCTAGATGATAACTTTTCGACTATTGTGACTGTAGCTAAATGGGGCCGCTCGGTCTACGTAAACATTCAGAAATTTGTGCAGTTTCAGCTAACTGTAAATGTTGTTGCTTTGATCGTCAATTTCTCTTCTGCTTGTTTGACTGGAAATGCTCCCCTCACTGCGGTTCAACTTCTATGGGTCAACATGATTATGGACACTCTTGGAGCACTTGCACTAGCCACTGAACCTCCTAACGAGGAGTTGATGAAAAGACCACCTGTTGGTAGGAAAGGAAACTTTATCAGTAATGTGATGTGGAGAAATATCTTGGGGCAGTCTATATATCAATTTGTTGTAATATGGTTCCTCCAGACCAGAGGAAAAGTAACGTTTCATCTTGATGGACCAGATTCTGATCTGATATTGAATACACTTATTTTCAACTCGTTTGTGTTCTGCCAGGTTTTCAATGAGATTAGTTCGAGGGATATGGAGAGGATAAATGTTTTTGAAGGTATACTGAAGAATTATGTCTTCGTTGCTGTCCTCACTTCCACTGTCGTCTTCCAAATTATAATTGTTGAATTCTTGGGCACCTTTGCAAACACATCTCCACTTAGTTTGAAGCAGTGGTTTGGTAGTGTTCTCTTTGGAGTCCTTGGCATGCCAATTGCAGCAGCTCTAAAGATGATCCCTGTGGGATCTGTCTGA
Predicted protein sequences of Glyma06g04900
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g04900.1 sequence type=predicted peptide gene model=Glyma06g04900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEIYLSENFGDVKPKNSSEEALQRWRKACWLVKNHKRRFRFTANLSKRFEAEAIRRSNQEKFRVAVLVSQAAIQFIHGLNLSSEYTVPEEVKAAGFEICADELGSIVEGRDSKKLKSHGGVDAITNKLNTSVDDGISTSEHLVNQRKEIYGVNKFAESPARGFWVYVWESLQDTTLMILAVCALVSLVVGIIMEGWPKGAQDGIGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKITVQVTRNSCRQKLSMYDLLPGDIVHLNIGDQVPADGLFVSGFSVLINESSLTGESEPVNVSELNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLREGSQWMWSGDDAMQIVEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKAYICGKIKEVNGSKVYSDFSSDIHDSALAILLESIFNNTGGEVVKNKDEKIEILGSPTETALLEFGLSLGGDFHKERQRSKLVKVEPFNSIKKRMGVVLQLPDGGFRAHCKGASEIILASCDKVVDSSGEVVALNEDSINHLNNMIETFAGEALRTLCLAYLDIHDEFSVGTAIPTRGYTCIGIVGIKDPVRPGVRESVAICRSAGIAVRMVTGDNINTAKAIARECGILTDGIAIEGPEFREKSEEELLDIIPKIQVMARSSPMDKHTLVKHLRTTFQEVVSVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYVNIQKFVQFQLTVNVVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNEELMKRPPVGRKGNFISNVMWRNILGQSIYQFVVIWFLQTRGKVTFHLDGPDSDLILNTLIFNSFVFCQVFNEISSRDMERINVFEGILKNYVFVAVLTSTVVFQIIIVEFLGTFANTSPLSLKQWFGSVLFGVLGMPIAAALKMIPVGSV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
