Glyma06g04881 - SoyBase

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Report for Sequence Feature Glyma06g04881

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3450994
stop:	3452908
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04881

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_G7ICC1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH85 n=1 Tax=Medicago truncatula RepID=G7ICC1_MEDTR	SoyBase	E_val: 5.00E-19	ISS
UniRef100_UPI0002339510	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339510 related cluster n=1 Tax=unknown RepID=UPI0002339510	SoyBase	E_val: 2.00E-90	ISS

Expression Patterns of Glyma06g04881

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g04881 not represented in the dataset	Glyma06g04881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04881

Paralog	Evidence	Comments
Glyma04g04801	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04881 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g04881

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04881

Limit To All Plant Sequences

>Glyma06g04881.1   sequence type=CDS   gene model=Glyma06g04881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCTGTTGGTGTTGGAGCCTTCCCTGATGGAGAATGGGATTGCTTTGGCAAAATGTTGGCTAATGAATCCCATTATTGCTCACCACAATTACTCGGGGAAGATGATGGGAGTGTTGGAATGCAATCCATGTTTTTCGCCACTCTTGATGTTGGGGGAAATAAGAGTATGTTTTACTCTTTTGACTCTCACAACTCTAATTTGCAGTATATTTCTCAAGAAAGCAGTCACAATAATAGCACTTGTAGTGACCATAGTGTCTTCATGATCAATCCGGAGGATCATACAAACTACCATTTTGGTTATGTTGATCATGTGCTAGCAAATAGTACATCCATGGATTTTTGCATGATGGATGAGAAAAACCCTGGCTCTTGTGTCCAATCTGACATTGTCATGAAAGACAATGTCAGTTTGAATGAAGATGAGGGAAGTGGCAAATCAGAGAATGTTTTCCTGCCAAACATTTGA

Predicted protein sequences of Glyma06g04881

Limit To All Plant Sequences

>Glyma06g04881.1   sequence type=predicted peptide   gene model=Glyma06g04881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPVGVGAFPDGEWDCFGKMLANESHYCSPQLLGEDDGSVGMQSMFFATLDVGGNKSMFYSFDSHNSNLQYISQESSHNNSTCSDHSVFMINPEDHTNYHFGYVDHVLANSTSMDFCMMDEKNPGSCVQSDIVMKDNVSLNEDEGSGKSENVFLPNI*

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