Glyma06g04870 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g04870

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3447831
stop:	3448922
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43190	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr5:17340300-17341511 REVERSE LENGTH=403	SoyBase	E_val: 9.00E-81	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_G7ICC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7ICC6_MEDTR	SoyBase	E_val: 4.00E-119	ISS
UniRef100_I1K858	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K858_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04870

Paralog	Evidence	Comments
Glyma04g04790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g045700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04870

Limit To All Plant Sequences

>Glyma06g04870.1   sequence type=CDS   gene model=Glyma06g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCTAGAATATGGAGCAAACTACCTCCTGATGTTGTAGAACACATACTTTTGTTACTTCCTCTCAAAACACTCTTGAATCTCAGACCCACTTGCAAGGCCTTCACCTGTCTCCTCTTTTCACCTTCATTTGTTTCCAAACACTCTTCTTCTTTATCTTCTTCCTCTTTATCACCCTTCTCTTCCTTTCTCTTACTCTCCCATCCTCAATTCCCTCACTATTTCCGTCTCTACGATTCCAACCTTTGCTCTTGGCGAACCCTCTCTCTCTCCCTCTCCAACTCTCTACCCTTCTCTTCTTCCTTCACTCTTGTTTCCTCCTCTGGTGGCCTCTTTTGTCTCTTCAACCCCACCTCTTCTACCTTTCTTGTGTACAACCTCTTTGTCAAGTCCTTCAGAAAAATCGAATCCCCAACAAGTCTTTCTCTTTATTTGGGACATGTCACTTTTGTTACCACCCCTCTTGGCTACTACATAGTACTTCTTCGTTCAAAGTCAACTTCCAACACTAGTGTCTTTGTTTATGATTCTAACGAACTCTCTTGTCGGTCTTTTGAGGGTTTCAATGCTGTTCTCAGCGGCAGTATTCACCAGCAGGGTACTTTCTTCGATGGGGGCTTGTATTTCACAACCCCGGAACCATTTTCAGTGGTGCCTATTGATTTGGATAGTGGAAGATGGGAGAGACACGTTGCTGAGTTGCCACAACAAGTCACTTTCATGAGGCTGGTGAGTGATGGAGAAGGGAAGTTGTACTTGCTTAGTGGTATTGGGAACGATGGAATCTTGAGGAGCATCAAGTTGTGGGAATTAACAAAGGGTGAAAGGGTTTGGGTGGAAGTGGTGGTGTTGCCTGAGATTAGGTGTAGGAAATTTGTGTGGGGAATGATCTTCGTTTGCTGCTATATGTGGCCAGAGATATTGTATTACAGTGTTTTGAAGAGGACTTGGGATTGGCTTCCAAGGTGCCCCTATTTGCCTCTCAAATCTAGCTGTGGTTTCAAGTGGTTTTCTTTTGTTCCAAAGCTCTATGCTTCGGTGTGA

Predicted protein sequences of Glyma06g04870

Limit To All Plant Sequences

>Glyma06g04870.1   sequence type=predicted peptide   gene model=Glyma06g04870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPRIWSKLPPDVVEHILLLLPLKTLLNLRPTCKAFTCLLFSPSFVSKHSSSLSSSSLSPFSSFLLLSHPQFPHYFRLYDSNLCSWRTLSLSLSNSLPFSSSFTLVSSSGGLFCLFNPTSSTFLVYNLFVKSFRKIESPTSLSLYLGHVTFVTTPLGYYIVLLRSKSTSNTSVFVYDSNELSCRSFEGFNAVLSGSIHQQGTFFDGGLYFTTPEPFSVVPIDLDSGRWERHVAELPQQVTFMRLVSDGEGKLYLLSGIGNDGILRSIKLWELTKGERVWVEVVVLPEIRCRKFVWGMIFVCCYMWPEILYYSVLKRTWDWLPRCPYLPLKSSCGFKWFSFVPKLYASV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain