Glyma06g04850 - SoyBase

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Report for Sequence Feature Glyma06g04850

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3432131
stop:	3436969
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27450	AT	Annotation by Michelle Graham. TAIR10: adenine phosphoribosyl transferase 1 \| chr1:9532042-9533807 FORWARD LENGTH=243	SoyBase	E_val: 3.00E-110	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006168	GO-bp	Annotation by Michelle Graham. GO Biological Process: adenine salvage	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009116	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleoside metabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003999	GO-mf	Annotation by Michelle Graham. GO Molecular Function: adenine phosphoribosyltransferase activity	SoyBase	N/A	ISS
KOG1712	KOG	Adenine phosphoribosyl transferases	JGI		ISS
PTHR11776	Panther	PHOSPHORIBOSYLTRANSFERASE	JGI		ISS
PF00156	PFAM	Phosphoribosyl transferase domain	JGI		ISS
UniRef100_D3YBB6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adeninephosphoribosyl transferase n=1 Tax=Trifolium repens RepID=D3YBB6_TRIRP	SoyBase	E_val: 1.00E-109	ISS
UniRef100_I1K855	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K855_SOYBN	SoyBase	E_val: 3.00E-168	ISS

Expression Patterns of Glyma06g04850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04850

Paralog	Evidence	Comments
Glyma04g04770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g045500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g04850

Limit To All Plant Sequences

>Glyma06g04850.2   sequence type=transcript   gene model=Glyma06g04850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAATATTACCCAATTGTTTTGCGTTCCAATGGAAAAGTGAGAAGTGAAGAGAATGCGGGTTGTTTGTTGCTCCAATTCAGGCGTGAGTGCCACTCTTCCATCTTTCCCTTGTCCCAGATTCCCTCCACTCATTGCAATTTCTTCGATCCGCTTTCTAAATTCCACACCCCTCCGTTCCACTGCTTCGCCGCGACAAGTTACAAGAATGGCTTCGAAGAATGCTCAACAAGACACGCGCTTAGCCAGAATCGCCTCTGCGATCCGAGTCATCCCCGACTTTCCTAAGCCAGGAATTTTGTTTCAGGACATAACCACGCTGCTTCTTGATACAAAGGCTTTCAAAGACACCGTTGACTTGTTTGTTGAGAGGTACAGAGATCAAAACATCAATGTTGTCGCAGGAGTTGAAGCAAGGGGCTTTATATTTGGTCCACCCATTGCATTAGCTATTGGAGCAAAATTTGTCCCCATGAGGAAACCCAATAAATTGCCTGGGGAGGTTATCTCAGAAGAGTATTCTTTGGAGTATGGAACAGACAAAATGGAGATGCATGTAGGGGCTGTACAACCTGGAGAACGAGCCTTAATCATAGATGATCTTATTGCCACTGGGGGAACGTTAGCTGGCTCTTGTTAGGAGCTTTATTGATGGCTGCTTAGATTTCCTCAAGATATATATTTTGATGCTGCGGAAACGGAAAGCTCAGTTCTGCTCAATTATTGTTATTATCATTATCTGTGACGATTGACGAATGAGAGAACGACGGCTATAATATAGGACTTGCTTGCCCCTTGGCAGCGGAAACTTAAATTTAATGACACATGTAAAAGGAACGGAACTCCATCTGATGCTCGTTTGGAGTGTGCTTCCTTAAAACTGATATGCTCATAACGTATAGCCACAGATATGCATCAAGTCACGATCAAATTAATTTAATTAATCACTTCGTGCTTAAATTTAAATATTGTAAAATCAATGGTAAATTGCACATAACTTCACTGTAGTTTC

Coding sequences of Glyma06g04850

Limit To All Plant Sequences

>Glyma06g04850.1   sequence type=CDS   gene model=Glyma06g04850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGGTTGTTTGTTGCTCCAATTCAGGCGTGAGTGCCACTCTTCCATCTTTCCCTTGTCCCAGATTCCCTCCACTCATTGCAATTTCTTCGATCCGCTTTCTAAATTCCACACCCCTCCGTTCCACTGCTTCGCCGCGACAAGTTACAAGAATGGCTTCGAAGAATGCTCAACAAGACACGCGCTTAGCCAGAATCGCCTCTGCGATCCGAGTCATCCCCGACTTTCCTAAGCCAGGAATTTTGTTTCAGGACATAACCACGCTGCTTCTTGATACAAAGGCTTTCAAAGACACCGTTGACTTGTTTGTTGAGAGGTACAGAGATCAAAACATCAATGTTGTCGCAGGAGTTGAAGCAAGGGGCTTTATATTTGGTCCACCCATTGCATTAGCTATTGGAGCAAAATTTGTCCCCATGAGGAAACCCAATAAATTGCCTGGGGAGGTTATCTCAGAAGAGTATTCTTTGGAGTATGGAACAGACAAAATGGAGATGCATGTAGGGGCTGTACAACCTGGAGAACGAGCCTTAATCATAGATGATCTTATTGCCACTGGGGGAACGTTAGGTGCAGCAATTAAGCTTCTAGAACGTGTTGGGGTGCATGTTGTGGAGTGTGCTTGTGTGATTGAATTACCAGAGTTAAAGGGGCGGGATAGGCTGGGAGACAAGTCGCTGTTTGTCTTGATTAAAGGGGGAGCCTGA

>Glyma06g04850.2   sequence type=CDS   gene model=Glyma06g04850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGGGTTGTTTGTTGCTCCAATTCAGGCGTGAGTGCCACTCTTCCATCTTTCCCTTGTCCCAGATTCCCTCCACTCATTGCAATTTCTTCGATCCGCTTTCTAAATTCCACACCCCTCCGTTCCACTGCTTCGCCGCGACAAGTTACAAGAATGGCTTCGAAGAATGCTCAACAAGACACGCGCTTAGCCAGAATCGCCTCTGCGATCCGAGTCATCCCCGACTTTCCTAAGCCAGGAATTTTGTTTCAGGACATAACCACGCTGCTTCTTGATACAAAGGCTTTCAAAGACACCGTTGACTTGTTTGTTGAGAGGTACAGAGATCAAAACATCAATGTTGTCGCAGGAGTTGAAGCAAGGGGCTTTATATTTGGTCCACCCATTGCATTAGCTATTGGAGCAAAATTTGTCCCCATGAGGAAACCCAATAAATTGCCTGGGGAGGTTATCTCAGAAGAGTATTCTTTGGAGTATGGAACAGACAAAATGGAGATGCATGTAGGGGCTGTACAACCTGGAGAACGAGCCTTAATCATAGATGATCTTATTGCCACTGGGGGAACGTTAGCTGGCTCTTGTTAG

Predicted protein sequences of Glyma06g04850

Limit To All Plant Sequences

>Glyma06g04850.1   sequence type=predicted peptide   gene model=Glyma06g04850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVVCCSNSGVSATLPSFPCPRFPPLIAISSIRFLNSTPLRSTASPRQVTRMASKNAQQDTRLARIASAIRVIPDFPKPGILFQDITTLLLDTKAFKDTVDLFVERYRDQNINVVAGVEARGFIFGPPIALAIGAKFVPMRKPNKLPGEVISEEYSLEYGTDKMEMHVGAVQPGERALIIDDLIATGGTLGAAIKLLERVGVHVVECACVIELPELKGRDRLGDKSLFVLIKGGA*

>Glyma06g04850.2   sequence type=predicted peptide   gene model=Glyma06g04850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVVCCSNSGVSATLPSFPCPRFPPLIAISSIRFLNSTPLRSTASPRQVTRMASKNAQQDTRLARIASAIRVIPDFPKPGILFQDITTLLLDTKAFKDTVDLFVERYRDQNINVVAGVEARGFIFGPPIALAIGAKFVPMRKPNKLPGEVISEEYSLEYGTDKMEMHVGAVQPGERALIIDDLIATGGTLAGSC*

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