Report for Sequence Feature Glyma06g04840
Feature Type: gene_model
Chromosome: Gm06
Start: 3425593
stop: 3427845
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g04840
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G27730 AT
Annotation by Michelle Graham. TAIR10: salt tolerance zinc finger | chr1:9648302-9648985 REVERSE LENGTH=227
SoyBase E_val: 1.00E-66 ISS
GO:0002679 GO-bp
Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response
SoyBase N/A ISS
GO:0006979 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to oxidative stress
SoyBase N/A ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0009409 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cold
SoyBase N/A ISS
GO:0009414 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to water deprivation
SoyBase N/A ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0009612 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus
SoyBase N/A ISS
GO:0009620 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fungus
SoyBase N/A ISS
GO:0009644 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to high light intensity
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0009695 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process
SoyBase N/A ISS
GO:0009723 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus
SoyBase N/A ISS
GO:0009733 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0009738 GO-bp
Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0009873 GO-bp
Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway
SoyBase N/A ISS
GO:0010117 GO-bp
Annotation by Michelle Graham. GO Biological Process: photoprotection
SoyBase N/A ISS
GO:0010200 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to chitin
SoyBase N/A ISS
GO:0015979 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis
SoyBase N/A ISS
GO:0035264 GO-bp
Annotation by Michelle Graham. GO Biological Process: multicellular organism growth
SoyBase N/A ISS
GO:0035556 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction
SoyBase N/A ISS
GO:0042538 GO-bp
Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response
SoyBase N/A ISS
GO:0045892 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003676 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PTHR26374 Panther
FAMILY NOT NAMED
JGI ISS
PTHR26374:SF459 Panther
JGI ISS
UniRef100_I0AW24 UniRef
Annotation by Michelle Graham. Best UniRef hit: C2H2 zinc-finger protein (Fragment) n=1 Tax=Glycine max RepID=I0AW24_SOYBN
SoyBase E_val: 1.00E-170 ISS
UniRef100_I0AW24 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: C2H2 zinc-finger protein (Fragment) n=1 Tax=Glycine max RepID=I0AW24_SOYBN
SoyBase E_val: 1.00E-170 ISS
Expression Patterns of Glyma06g04840
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g04840
Paralog Evidence Comments
Glyma04g04760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g04840 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g045400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g04840
Coding sequences of Glyma06g04840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g04840.1 sequence type=CDS gene model=Glyma06g04840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTTGGAAGCTCTTCAATCACCCACCACAGCCACTCCATCGTTTAGTCCCTTTGAAGAAACCAGTCTCAGTTACTTAGAGACACCGTGGACGAAAGGAAAGCGTTCTAAGCGTAGCCGCACGGAGCAACAACTGCAACACCCTTCATGCACCGAGGAAGAGTACCTCGCTCTTTGTCTCATCATGCTCGCTCGCGGCGGCGCCGGCAGTGTCTCCACCGCCAAACCCGCTGTCTCCGACAACAATTCTGCGCCGCTATCCGCCGCCAAACTGAGCTACAAATGTTCGGTTTGCAACAAAGCCTTCTCCTCTTACCAAGCACTCGGAGGACACAAGGCCAGCCACCGGAAGCTCGCCGGAGAAAACCACCCGACCTCCTCCGCCGTGACGACGAGTTCGGCGTCGAACGGTGGTGGTAGGACCCACGAGTGCTCCATCTGCCACAAGACGTTTTCGACAGGACAGGCCTTGGGAGGACACAAACGTTGTCACTACGAAGGCGGTAACAGCGCCGTAACCGCCTCTGAGGGAGTGGGGTCCACTCACACAGGAAGCCACCGCGATTTCGATCTCAACCTCCCGGCTTTTCCGGACTTCTCAGCAAGGTTCTTCGTCGATGACGAGGTTACCAGTCCTCATCCATCCAAGAAGTCCCGTTTCAATTTGACCATACCCAAGATTGAAATCCCTCAATACTGA
Predicted protein sequences of Glyma06g04840
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g04840.1 sequence type=predicted peptide gene model=Glyma06g04840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALEALQSPTTATPSFSPFEETSLSYLETPWTKGKRSKRSRTEQQLQHPSCTEEEYLALCLIMLARGGAGSVSTAKPAVSDNNSAPLSAAKLSYKCSVCNKAFSSYQALGGHKASHRKLAGENHPTSSAVTTSSASNGGGRTHECSICHKTFSTGQALGGHKRCHYEGGNSAVTASEGVGSTHTGSHRDFDLNLPAFPDFSARFFVDDEVTSPHPSKKSRFNLTIPKIEIPQY*