Glyma06g04831 - SoyBase

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Report for Sequence Feature Glyma06g04831

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3411569
stop:	3415380
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04831

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19570	AT	Annotation by Michelle Graham. TAIR10: Family of unknown function (DUF566) \| chr3:6797778-6801344 FORWARD LENGTH=644	SoyBase	E_val: 3.00E-79	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04484	PFAM	Family of unknown function (DUF566)	JGI		ISS
UniRef100_Q9LJN9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Emb\|CAB52444.1 n=1 Tax=Arabidopsis thaliana RepID=Q9LJN9_ARATH	SoyBase	E_val: 6.00E-70	ISS
UniRef100_UPI0001BA588F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001BA588F related cluster n=1 Tax=unknown RepID=UPI0001BA588F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04831

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g04831 not represented in the dataset	Glyma06g04831 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g04831 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g045300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04831

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g04831

Limit To All Plant Sequences

>Glyma06g04831.2   sequence type=transcript   gene model=Glyma06g04831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTTCCTTCCCATTTAGCATTTTCTTCATTTTGAATTCACTCCTTTTTCCTTTTGCCGCAGCAACTCAACATTACTTTGAGTTCCATTCCAACACTTGATGACACAACCACAATGGTAGAAGCTGCAATTTCCACGCCCAAAAAAGTCACGTCTCGTTACACCTCATCATCATCATCTCCTCGCTCACCTTCGCCTTTCACGTCCAAACGGTCACAGTCGCTCGAGCGGAGACGACCCGGAACGACAGCGTCGTCGTCTGGGAAAATGCTTCTGACTTCGACAACAACGAGGAGCTTATCCGTGTCGTTTCAGGGCGAGTCGTTCCGGATCACCGTCAACAAAGCCAAACCAACAACCACAAACGTTGCTGTCCCTGCTCCCAAACTCCTCGCGCCGAGAAAGTCAGTGTTGAATGGTGCATCGTCTCCACTAGGAGTTGTGAATAGCAGAGGCCAAGTTTCTTATATTCGTCCCGCTTCACCCAACAAGGTACCTTCATCTTCCCGAGGTGTGAGTCCCTTGAGGCTCAGAAACGGAGCTTCCCCTAATGGTTTCAGCAGCATCAACGAGTCTTCTATTTTGACCTTTGCCATTGATGTTAAGAGAGGGAGGGTCGGAGAAAACCGAATTTTCGAGGCGCATTCGCTGAGGCTTCTCTATAACCGCCTCTTGCAATGGCGTTTTGTCAACGCCCGAGCAGATTCTGACCTCTCTGTGCAGAAATCCAATGCTCAGAATTGTCTCTATGATGCTTGGGCATCTACCACTAAACTACGAGAATCTGTGAGTGCTAAAAGGAGAGAGTTACAATTGCTGAAGCATAAGTTGAAGCTAATTTTCATCCTCAAGGACCAAATGATGTATTTGGAAGATTGGGCTAATTTGGATCGAGTTTACACAAATTCACTTTCGGGAGCTATTGAAGCACTAAAGGCTAGTACTCTCCGCCTTCCTGTTGTTGATGGGGCCAAGGCAGATGTACTGAAAGTGAAGGATGCTGTTTGTTCAGCGGTGGATGTAATGAAGGCTATGGCATCCTCCATATGCCTATTGTTTCCAAAGGTTGGACATGTAAACTCGTTGGTAGTTGAAATTGCTAACTTGAGTACAAAGGAGCATGTTTTGCTTGATGAATGCAGAGACCTTTTATCAATGATTACAGCCATGCAGGTTAGAGAGTGTAGCCTGAGAACACATCTTTCACAAATAAAATGGTTACCTGAAGCTCAACATTAACGGTAACAAGCATACAACTGTATCTATGACCAAGATGACTTTCATTGCTAACGTATCGTAAGGTATGATGTAGTGTGCTAATAGGTGTGCTTATTTTGGCCATGCATTCAATACATACCTGTATGATGATTGATCATATGCAAAGAGTCAGGATTGGAAGTTGATGTTTTAAAATGCAAGTTTGTTTATATATGCCCTTTGTTTTTCTTTTTTCTTATTGTTATTTTAAAATTTCCAAAGGATGTATATAAACCGTGTAGCATGTTATATTTTAGTTGAATCTTTTGTATTTGTTAGCTCATAAATTGTGTAATTATGGCGCGGTTAGTAAGGTATCTGGTTCTTTTTCCTTGTGTTTCTAATCATAAAGGGGATTGGTATGTACCCATAGAAACTATCCAAAAAGTTCATGTGCAATATAAACATTCATTTTCCCC

Coding sequences of Glyma06g04831

Limit To All Plant Sequences

>Glyma06g04831.1   sequence type=CDS   gene model=Glyma06g04831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGAAGCTGCAATTTCCACGCCCAAAAAAGTCACGTCTCGTTACACCTCATCATCATCATCTCCTCGCTCACCTTCGCCTTTCACGTCCAAACGGTCACAGTCGCTCGAGCGGAGACGACCCGGAACGACAGCGTCGTCGTCTGGGAAAATGCTTCTGACTTCGACAACAACGAGGAGCTTATCCGTGTCGTTTCAGGGCGAGTCGTTCCGGATCACCGTCAACAAAGCCAAACCAACAACCACAAACGTTGCTGTCCCTGCTCCCAAACTCCTCGCGCCGAGAAAGTCAGTGTTGAATGGTGCATCGTCTCCACTAGGAGTTGTGAATAGCAGAGGCCAAGTTTCTTATATTCGTCCCGCTTCACCCAACAAGGTACCTTCATCTTCCCGAGGTGTGAGTCCCTTGAGGCTCAGAAACGGAGCTTCCCCTAATGGTTTCAGCAGCATCAACGAGTCTTCTATTTTGACCTTTGCCATTGATGTTAAGAGAGGGAGGGTCGGAGAAAACCGAATTTTCGAGGCGCATTCGCTGAGGCTTCTCTATAACCGCCTCTTGCAATGGCGTTTTGTCAACGCCCGAGCAGATTCTGACCTCTCTGTGCAGAAATCCAATGCTCAGAATTGTCTCTATGATGCTTGGGCATCTACCACTAAACTACGAGAATCTGTGAGTGCTAAAAGGAGAGAGTTACAATTGCTGAAGCATAAGTTGAAGCTAATTTTCATCCTCAAGGACCAAATGATGTATTTGGAAGATTGGGCTAATTTGGATCGAGTTTACACAAATTCACTTTCGGGAGCTATTGAAGCACTAAAGGCTAGTACTCTCCGCCTTCCTGTTGTTGATGGGGCCAAGGCAGATGTACTGAAAGTGAAGGATGCTGTTTGTTCAGCGGTGGATGTAATGAAGGCTATGGCATCCTCCATATGCCTATTGTTTCCAAAGGTTGGACATGTAAACTCGTTGGTAGTTGAAATTGCTAACTTGAGTACAAAGGAGCATGTTTTGCTTGATGAATGCAGAGACCTTTTATCAATGATTACAGCCATGCAGGTTAGAGAGTGTAGCCTGAGAACACATCTTTCACAAATAAAATGGTTACCTGAAGCTCAACATTAA

>Glyma06g04831.2   sequence type=CDS   gene model=Glyma06g04831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGAAGCTGCAATTTCCACGCCCAAAAAAGTCACGTCTCGTTACACCTCATCATCATCATCTCCTCGCTCACCTTCGCCTTTCACGTCCAAACGGTCACAGTCGCTCGAGCGGAGACGACCCGGAACGACAGCGTCGTCGTCTGGGAAAATGCTTCTGACTTCGACAACAACGAGGAGCTTATCCGTGTCGTTTCAGGGCGAGTCGTTCCGGATCACCGTCAACAAAGCCAAACCAACAACCACAAACGTTGCTGTCCCTGCTCCCAAACTCCTCGCGCCGAGAAAGTCAGTGTTGAATGGTGCATCGTCTCCACTAGGAGTTGTGAATAGCAGAGGCCAAGTTTCTTATATTCGTCCCGCTTCACCCAACAAGGTACCTTCATCTTCCCGAGGTGTGAGTCCCTTGAGGCTCAGAAACGGAGCTTCCCCTAATGGTTTCAGCAGCATCAACGAGTCTTCTATTTTGACCTTTGCCATTGATGTTAAGAGAGGGAGGGTCGGAGAAAACCGAATTTTCGAGGCGCATTCGCTGAGGCTTCTCTATAACCGCCTCTTGCAATGGCGTTTTGTCAACGCCCGAGCAGATTCTGACCTCTCTGTGCAGAAATCCAATGCTCAGAATTGTCTCTATGATGCTTGGGCATCTACCACTAAACTACGAGAATCTGTGAGTGCTAAAAGGAGAGAGTTACAATTGCTGAAGCATAAGTTGAAGCTAATTTTCATCCTCAAGGACCAAATGATGTATTTGGAAGATTGGGCTAATTTGGATCGAGTTTACACAAATTCACTTTCGGGAGCTATTGAAGCACTAAAGGCTAGTACTCTCCGCCTTCCTGTTGTTGATGGGGCCAAGGCAGATGTACTGAAAGTGAAGGATGCTGTTTGTTCAGCGGTGGATGTAATGAAGGCTATGGCATCCTCCATATGCCTATTGTTTCCAAAGGTTGGACATGTAAACTCGTTGGTAGTTGAAATTGCTAACTTGAGTACAAAGGAGCATGTTTTGCTTGATGAATGCAGAGACCTTTTATCAATGATTACAGCCATGCAGGTTAGAGAGTGTAGCCTGAGAACACATCTTTCACAAATAAAATGGTTACCTGAAGCTCAACATTAA

Predicted protein sequences of Glyma06g04831

Limit To All Plant Sequences

>Glyma06g04831.1   sequence type=predicted peptide   gene model=Glyma06g04831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEAAISTPKKVTSRYTSSSSSPRSPSPFTSKRSQSLERRRPGTTASSSGKMLLTSTTTRSLSVSFQGESFRITVNKAKPTTTNVAVPAPKLLAPRKSVLNGASSPLGVVNSRGQVSYIRPASPNKVPSSSRGVSPLRLRNGASPNGFSSINESSILTFAIDVKRGRVGENRIFEAHSLRLLYNRLLQWRFVNARADSDLSVQKSNAQNCLYDAWASTTKLRESVSAKRRELQLLKHKLKLIFILKDQMMYLEDWANLDRVYTNSLSGAIEALKASTLRLPVVDGAKADVLKVKDAVCSAVDVMKAMASSICLLFPKVGHVNSLVVEIANLSTKEHVLLDECRDLLSMITAMQVRECSLRTHLSQIKWLPEAQH*

>Glyma06g04831.2   sequence type=predicted peptide   gene model=Glyma06g04831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEAAISTPKKVTSRYTSSSSSPRSPSPFTSKRSQSLERRRPGTTASSSGKMLLTSTTTRSLSVSFQGESFRITVNKAKPTTTNVAVPAPKLLAPRKSVLNGASSPLGVVNSRGQVSYIRPASPNKVPSSSRGVSPLRLRNGASPNGFSSINESSILTFAIDVKRGRVGENRIFEAHSLRLLYNRLLQWRFVNARADSDLSVQKSNAQNCLYDAWASTTKLRESVSAKRRELQLLKHKLKLIFILKDQMMYLEDWANLDRVYTNSLSGAIEALKASTLRLPVVDGAKADVLKVKDAVCSAVDVMKAMASSICLLFPKVGHVNSLVVEIANLSTKEHVLLDECRDLLSMITAMQVRECSLRTHLSQIKWLPEAQH*

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