Glyma06g04820 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g04820

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3398865
stop:	3407988
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43130	AT	Annotation by Michelle Graham. TAIR10: TBP-associated factor 4 \| chr5:17315608-17321144 REVERSE LENGTH=823	SoyBase	E_val: 0	ISS
GO:0006352	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, initiation	SoyBase	N/A	ISS
GO:0009630	GO-bp	Annotation by Michelle Graham. GO Biological Process: gravitropism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005669	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: transcription factor TFIID complex	SoyBase	N/A	ISS
PTHR15138	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15138:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF05236	PFAM	Transcription initiation factor TFIID component TAF4 family	JGI		ISS
PF12174	PFAM	RST domain of plant C-terminal	JGI		ISS
UniRef100_D3YBD2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription initiation factor n=1 Tax=Trifolium repens RepID=D3YBD2_TRIRP	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339D34	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339D34 related cluster n=1 Tax=unknown RepID=UPI0002339D34	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04820

Paralog	Evidence	Comments
Glyma04g04740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g045200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04820

Limit To All Plant Sequences

>Glyma06g04820.3   sequence type=CDS   gene model=Glyma06g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCATCTATAGTGAAGCTTCTGGAAGATGACGAGGATGAAAGTATGCACTCAGGGGCAGACGTGGAAGCATTCCAGGCTGCATTAAATAGAGACATAGGAGGAGATACTTCGACTTCTCAGTTGTCTGGTTCAGACACAGGAAGCAATAATTCATTAAGCCAGTCATTACCAAAGCAGCCAACTTCTACCCATGACAAGCAAAGTGACTGTCAAAATCAAGAGCCTAAAGTTGTGCAGCAGCAAGAGCAACAACATTCGTCTGAAATGGAGCAGAAGCCACAGCAACCTCTTGTTGAACAACTACAGAATGCTGCTTCTCAGGATGCCAATAATCTCCCTTCATCTCAGAAACAATCTCAAGATGAAAGTGCTCAAGGCCATACTGCACAAGCTCCCCACCAAAATTCTCAAACAAATGTAACTCAGAATTCTGAAAAAGATCCTGTCTTCAACCATGAGGCAGTCAACACACATAATCCTAACCATGAATCTCAGTATGCAAAGCTGCAGCAAATGAGTAATCAACAGGCCACTGTCAAGGAACAGCCTGGAAGTCAGGTCGATCGGAATAAACAGGTACCATTTGCCATGTTGCTCCCTATGTTGATTCCCCAGCTTCCCAAAGACAGAGCCATGCAACTTCAAACTTTATTTAATAAATTGAAGAAAGATGAAATGCCCAAAGATCAGTTTGTGCGGCTTATGAAAGGTATTGTAGGGGATCAGATGCTTAGATTAGCATTAACGAAAGTGCAATTACAGACAAGATCCAACCCAGCACCCACTGGGCAGCAGCATCCTCATGTAAGGACGCCAAATGTTAATTCAGGTGCAACAAAATTTAATGATCCCCATGCATTAGCCCATCTGCATCAGAGAAGTATGAATGCTGCTGCAGATCAATCTAATAATACTTCTTCAGCCGTCCAAGTAAAGAATGAACCAACCTATCCAACTATGGACATTAATGCTAAAAAATCTCGGGAACTGGATGTTCAAGTAGAATCTCAAGGAGCGCAACTAAATCAGTTACCATCATCCAGTTCTAATGCTGTTAGTCAAGAAACGGAAAGATCCTCACTTCACTTACAAGGCCTTAATAAGGAGCAACAACAGCATCTACATTTCCCTTCAGCATATGGTAACAGTGGTGGTAATTATAACCCTTTTTCGGGCTCAACCAGTAGTTCCACATCATCTATCAGACCACAACCTTTTGATTCACACATGAGGCAAATTCCACATCAGAGCATCAGTCCAAATCAATTAGGTGGGTCAACACAGGGTTTGATTGGTTTGACAAAACTTGATCAGCAAAATTCTTTCAATGATCCCAAGAGAATGCCTGGTGGATTTGTGTCCCCTGTGGCAAACAATACAACATCACAACAAACATCAAATTCTTGGCAACCATCAGCAAACAAAGAACAAAGTTCAGGCTCGTTTTCATCTGTTCCATATGTAAAAAAGGAGCCTAATGACCTGTCTACCGAGCAGCAACACAGGCATAATTTGTCTAAATTGCACGGGCTGCATTCTGTTAATTCTGTGCAAAATGAACAGGGTAGCAGTGCCAATCAAGGCACCCTAAAGGAGGAGTTTTCAAGAGGCTTTCCAGCATCCACAAGTATGCCGCATACAACATCTAGCTTGCTGCCTCTCAATTCTGCTTCCCCTTCTGTATCTCAACTTGACCCTAGTGCCACTTTAAGCCCTCAGATCCCATCAAACACGTCTGTTATAAATGCAAGGACACCTCTGAAAAAGCCTTCTCCTGGCCAGAAGAAACCAATTGAAGCACTTGGTTCTTCACCTCCTCCTCCAAGTAAGAAACAAAAAGTGTCTGGGGCATCTCTTGAGCCAAGCATTGAACAACTTAATGATGTTACTGCTGTTAGTGGTGTTGATCTTAGGGAGGAGGAAGAACAATTATTTTCTGGGCCCAAGGAGGACAGTCGAGCTTCAGAAGCATCTCGCAGAGTTGTGCAAGAAGAGGAGGAAAGTCTGATTTTGCAGAAAGCTCCATTGCAAAGAAAACTGATTGAGATTATAAATGAGTGTGGCTTGAAGGGTGTGAGTAATGATTTGGAGAGATGCTTGTCACTGTGTGTGGAGGAAAGAATGCGTGGAGTAATAAGTAATGTGATTAGAATGTCAAAACAGCGGGTTGATTTGGAGAAGACAAGCCATCGGACTGTTGTCACTTCAGATGTACGGCAGCAAATCCTAACAATGAATAAGAAGGCAAGGGAAGAATGGGAGAAAAAACAGTCAGAAACAGAGAAGCTCCGGAAACTAAATGATGTAGATGGTAATGCTGGGATTGATGGTGACAAGGAGAAAGATGAGGGTCGGACTAAAGCAACAAAGGTGAACAAAGAAGTGGATGACAAGATGAGGACAAATGCTGCTAATGTTGCTGCCCGAGCTGCTGTTGGGGGAGATGACATGCTGTCAAAGTGGCAACTTATGGCTGAGCAAGCCAGACAGAAGAAACGTGGTGGGGGAATGGATGCTTCATCTGGTTCTCAACCAGCTAAAGATGTGAGCCAGAAATCTTCATCAACATCAGGAAGGAGTACAAAAGATAATCAGGCAAGAGAGAAAAAAGGTCCAACTTCTGGGGCTGGTAGAAAATTTGGGAGAAGTCATGCCACGACACCTCAAAATAGCATAGCTCGAAGCATATCTGTCAAGGACGTGATTGCAGTCCTGGAGAGGGAACCCCAGATGTCCAAATCATCACTCTTATATCGATTGTATGAGAGAATTCATTCTGACACCTCAACTGAATAA

Predicted protein sequences of Glyma06g04820

Limit To All Plant Sequences

>Glyma06g04820.3   sequence type=predicted peptide   gene model=Glyma06g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPSIVKLLEDDEDESMHSGADVEAFQAALNRDIGGDTSTSQLSGSDTGSNNSLSQSLPKQPTSTHDKQSDCQNQEPKVVQQQEQQHSSEMEQKPQQPLVEQLQNAASQDANNLPSSQKQSQDESAQGHTAQAPHQNSQTNVTQNSEKDPVFNHEAVNTHNPNHESQYAKLQQMSNQQATVKEQPGSQVDRNKQVPFAMLLPMLIPQLPKDRAMQLQTLFNKLKKDEMPKDQFVRLMKGIVGDQMLRLALTKVQLQTRSNPAPTGQQHPHVRTPNVNSGATKFNDPHALAHLHQRSMNAAADQSNNTSSAVQVKNEPTYPTMDINAKKSRELDVQVESQGAQLNQLPSSSSNAVSQETERSSLHLQGLNKEQQQHLHFPSAYGNSGGNYNPFSGSTSSSTSSIRPQPFDSHMRQIPHQSISPNQLGGSTQGLIGLTKLDQQNSFNDPKRMPGGFVSPVANNTTSQQTSNSWQPSANKEQSSGSFSSVPYVKKEPNDLSTEQQHRHNLSKLHGLHSVNSVQNEQGSSANQGTLKEEFSRGFPASTSMPHTTSSLLPLNSASPSVSQLDPSATLSPQIPSNTSVINARTPLKKPSPGQKKPIEALGSSPPPPSKKQKVSGASLEPSIEQLNDVTAVSGVDLREEEEQLFSGPKEDSRASEASRRVVQEEEESLILQKAPLQRKLIEIINECGLKGVSNDLERCLSLCVEERMRGVISNVIRMSKQRVDLEKTSHRTVVTSDVRQQILTMNKKAREEWEKKQSETEKLRKLNDVDGNAGIDGDKEKDEGRTKATKVNKEVDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKKRGGGMDASSGSQPAKDVSQKSSSTSGRSTKDNQAREKKGPTSGAGRKFGRSHATTPQNSIARSISVKDVIAVLEREPQMSKSSLLYRLYERIHSDTSTE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain