Glyma06g04790 - SoyBase

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Report for Sequence Feature Glyma06g04790

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3377954
stop:	3380870
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27700	AT	Annotation by Michelle Graham. TAIR10: Syntaxin/t-SNARE family protein \| chr1:9640394-9641752 REVERSE LENGTH=297	SoyBase	E_val: 1.00E-81	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
PF09177	PFAM	Syntaxin 6, N-terminal	JGI		ISS
UniRef100_I1K847	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K847_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HRK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin-61 n=1 Tax=Medicago truncatula RepID=Q2HRK3_MEDTR	SoyBase	E_val: 9.00E-132	ISS

Expression Patterns of Glyma06g04790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04790

Paralog	Evidence	Comments
Glyma04g04710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g044900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g04790

Limit To All Plant Sequences

>Glyma06g04790.2   sequence type=transcript   gene model=Glyma06g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTTTCTAAAAATAAATAAAAAATCATACTAAGAACCAACTTGACCGACCGCACAATTTTCATGAATTAAATGGGTGATTTACTCTGGAGGAAGCTAATCTTCATCCCACCCTACTGTACCAGCTGACACGGACATCATCTCACGCGTGCTTGCTGTATATCCAATTCTTCATACTTTTCCTTCATTGCCCAAAATAATTTTGTTACGTTTCCCTCCAACTATTCCAATCCATCTTTTAATTCACCTTCTCCCCCTTGTAACCCAACACAGATTACATACATCGAATTCCTCGGTTATTTCCTTTCCCAGATTTCGGTTGTTATTAATTATCATATTATTATTCAATATTCATGGCGTCGAGTTTTGATCGATGGGAAAAAGATCCTTTCTTTAACGCGGCCGAAGAAGTTCAGGAATCTGCAGACAGGATGGAATCTACATATAGAACATGGATTCATGCAAGGAGAGATGCGTCCAGCCCATGGAACTGTGATGAACTCCGCCGAGATCTAGAAACTACTCTTGGCACTGCTAAATGGCAGTTAGAGGAATTTGAACGGGCAGCTAGGTCAAGTTATAGCAGAGTTTCAAGTGAGGATGCGAGAAATAGACACCGGGATTTTATTCATGCCATTGGTGACAAGATTCAGAAAGTTGAACATTCGTTACAAGAATCTGTTCATTCAGGTAGCAAGGCATCTCTGCCTTGGACGCGTCTGGATGAAGGAGAACGAGATGAGCTTGCGTCGTTTCTTTCGGGAATACCGGTTCTCATTAAATGTGTTGGCAGAGACAATGAAAGTCTGCAAGCTAATTGTTCAAGCAATTTACATGTTTCATCTGGGTGGGGTTCGTCCGAAGCAGCGCTGGAGAAATCACGTGGGCATCGCAGGGCAGCTAGTGCTGATGCTGATATTGGTACTTGGAAAATCACTGTTTCTGACGATGTGCAACAATCTAGTTCCTCCAATGGTTCTTCTGGTCCTACTCCTATGCATAAGGTAGCCAGTCTCTCTGGATTTTTTGGTTCTATGGAAACCATCTCTAAGTTCAAGTGGCCTAAGAATGGTTATAGAAAGCTCAAAGCGGTTAATCCTTGTGAAGAAGAGGACAAGGCACTGCTACCACCAGCTGGATTGAATGGGGGCATCGAAGCATACTATGAGAGAAGTAAGAGTTCCCTTGGCAATTGTAATGAATGTTATGATAAGCAACTCCACGGGTGGTATGGGGCTCTCCATAGGCAGCTTCAAAGATCTCAATACCAAATGCAATACAATCGACCAGTTCAAATAGCTGTATGGGCTGTTATTCTCCTTTGCTTTATTGTTTTAATTGCTTTTTGCACGATGTAGAAAGGAAGATTTAGATAAATTTTCTATCAATTTCTGGTTGCGGCAGGCAGAATGGGAGAATGGACAAACAATCTTTTGATTCGAGTTCATATAATCTATGTTGTCGCTTAAGCAAGCGAGAGTTTTTTATCTACTTCTCGCTGGCATACATGGTGTCGATATAACATTTCAAGTGCTTTGATATTATTACTACTTAGAGTCTTCCATTATACATAGCAGTAGCATTTCCTTATTTTTTTCTTCTTCTCATTTTTGCTATCTATTTTTCGTTCACCTATTCCAGAATGGTCTCATGAAGATTGAAGAGTATTCCCTCTTCGCTGTTGTACTATATCACAAGATGTAAATGACAAAGTCAATGGACATAAATGTTGCAACGAATAAGATTTTAGCTTGCATGTATAAATTGAGGATAATATACCATGATTCTGTTTGGATTATTTATGAAATAATTTTAAGAAAATAA

Coding sequences of Glyma06g04790

Limit To All Plant Sequences

>Glyma06g04790.1   sequence type=CDS   gene model=Glyma06g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGAGTTTTGATCGATGGGAAAAAGATCCTTTCTTTAACGCGGCCGAAGAAGTTCAGGAATCTGCAGACAGGATGGAATCTACATATAGAACATGGATTCATGCAAGGAGAGATGCGTCCAGCCCATGGAACTGTGATGAACTCCGCCGAGATCTAGAAACTACTCTTGGCACTGCTAAATGGCAGTTAGAGGAATTTGAACGGGCAGCTAGGTCAAGTTATAGCAGAGTTTCAAGTGAGGATGCGAGAAATAGACACCGGGATTTTATTCATGCCATTGGTGACAAGATTCAGAAAGTTGAACATTCGTTACAAGAATCTGTTCATTCAGGTAGCAAGGCATCTCTGCCTTGGACGCGTCTGGATGAAGGAGAACGAGATGAGCTTGCGTCGTTTCTTTCGGGAATACCGGTTCTCATTAAATGTGTTGGCAGAGACAATGAAAGTCTGCAAGCTAATTGTTCAAGCAATTTACATGTTTCATCTGGGTGGGGTTCGTCCGAAGCAGCGCTGGAGAAATCACGTGGGCATCGCAGGGCAGCTAGTGCTGATGCTGATATTGGTACTTGGAAAATCACTGTTTCTGACGATGTGCAACAATCTAGTTCCTCCAATGGTTCTTCTGGTCCTACTCCTATGCATAAGGTAGCCAGTCTCTCTGGATTTTTTGGTTCTATGGAAACCATCTCTAAGTTCAAGTGGCCTAAGAATGGTTATAGAAAGCTCAAAGCGGTTAATCCTTGTGAAGAAGAGGACAAGGCACTGCTACCACCAGCTGGATTGAATGGGGGCATCGAAGCATACTATGAGAGAAGTAAGAGTTCCCTTGGCAATTGTAATGAATGTTATGATAAGCAACTCCACGGGTGGTATGGGGCTCTCCATAGGCAGCTTCAAAGATCTCAATACCAAATGCAATACAATCGACCAGTTCAAATAGCTGTATGGGCTGTTATTCTCCTTTGCTTTATTGGTAGGCCTTTTTTTCTTTCTATAATATGTATGGCCTTCTTGATGATGCTTTCCATTTACCCCCCCCCCCCCCCCTCCTTTGGATATACAACTTTTTTTTGCCCCATTTTAGTTTTTCCTGGTTCCTTTGTTCGTGAAGCCTTTTCATGGTATCATTGTTCTTGCCTTTTCATGCTTTCTTTGTGGGCATGA

>Glyma06g04790.2   sequence type=CDS   gene model=Glyma06g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCGAGTTTTGATCGATGGGAAAAAGATCCTTTCTTTAACGCGGCCGAAGAAGTTCAGGAATCTGCAGACAGGATGGAATCTACATATAGAACATGGATTCATGCAAGGAGAGATGCGTCCAGCCCATGGAACTGTGATGAACTCCGCCGAGATCTAGAAACTACTCTTGGCACTGCTAAATGGCAGTTAGAGGAATTTGAACGGGCAGCTAGGTCAAGTTATAGCAGAGTTTCAAGTGAGGATGCGAGAAATAGACACCGGGATTTTATTCATGCCATTGGTGACAAGATTCAGAAAGTTGAACATTCGTTACAAGAATCTGTTCATTCAGGTAGCAAGGCATCTCTGCCTTGGACGCGTCTGGATGAAGGAGAACGAGATGAGCTTGCGTCGTTTCTTTCGGGAATACCGGTTCTCATTAAATGTGTTGGCAGAGACAATGAAAGTCTGCAAGCTAATTGTTCAAGCAATTTACATGTTTCATCTGGGTGGGGTTCGTCCGAAGCAGCGCTGGAGAAATCACGTGGGCATCGCAGGGCAGCTAGTGCTGATGCTGATATTGGTACTTGGAAAATCACTGTTTCTGACGATGTGCAACAATCTAGTTCCTCCAATGGTTCTTCTGGTCCTACTCCTATGCATAAGGTAGCCAGTCTCTCTGGATTTTTTGGTTCTATGGAAACCATCTCTAAGTTCAAGTGGCCTAAGAATGGTTATAGAAAGCTCAAAGCGGTTAATCCTTGTGAAGAAGAGGACAAGGCACTGCTACCACCAGCTGGATTGAATGGGGGCATCGAAGCATACTATGAGAGAAGTAAGAGTTCCCTTGGCAATTGTAATGAATGTTATGATAAGCAACTCCACGGGTGGTATGGGGCTCTCCATAGGCAGCTTCAAAGATCTCAATACCAAATGCAATACAATCGACCAGTTCAAATAGCTGTATGGGCTGTTATTCTCCTTTGCTTTATTGTTTTAATTGCTTTTTGCACGATGTAG

Predicted protein sequences of Glyma06g04790

Limit To All Plant Sequences

>Glyma06g04790.1   sequence type=predicted peptide   gene model=Glyma06g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSFDRWEKDPFFNAAEEVQESADRMESTYRTWIHARRDASSPWNCDELRRDLETTLGTAKWQLEEFERAARSSYSRVSSEDARNRHRDFIHAIGDKIQKVEHSLQESVHSGSKASLPWTRLDEGERDELASFLSGIPVLIKCVGRDNESLQANCSSNLHVSSGWGSSEAALEKSRGHRRAASADADIGTWKITVSDDVQQSSSSNGSSGPTPMHKVASLSGFFGSMETISKFKWPKNGYRKLKAVNPCEEEDKALLPPAGLNGGIEAYYERSKSSLGNCNECYDKQLHGWYGALHRQLQRSQYQMQYNRPVQIAVWAVILLCFIGRPFFLSIICMAFLMMLSIYPPPPPSFGYTTFFCPILVFPGSFVREAFSWYHCSCLFMLSLWA*

>Glyma06g04790.2   sequence type=predicted peptide   gene model=Glyma06g04790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSFDRWEKDPFFNAAEEVQESADRMESTYRTWIHARRDASSPWNCDELRRDLETTLGTAKWQLEEFERAARSSYSRVSSEDARNRHRDFIHAIGDKIQKVEHSLQESVHSGSKASLPWTRLDEGERDELASFLSGIPVLIKCVGRDNESLQANCSSNLHVSSGWGSSEAALEKSRGHRRAASADADIGTWKITVSDDVQQSSSSNGSSGPTPMHKVASLSGFFGSMETISKFKWPKNGYRKLKAVNPCEEEDKALLPPAGLNGGIEAYYERSKSSLGNCNECYDKQLHGWYGALHRQLQRSQYQMQYNRPVQIAVWAVILLCFIVLIAFCTM*

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