Glyma06g04680 - SoyBase

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Report for Sequence Feature Glyma06g04680

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3315730
stop:	3317931
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47230	AT	Annotation by Michelle Graham. TAIR10: CYCLIN A3;4 \| chr1:17306752-17308587 FORWARD LENGTH=369	SoyBase	E_val: 2.00E-129	ISS
GO:0000079	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0000278	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle	SoyBase	N/A	ISS
GO:0010389	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle	SoyBase	N/A	ISS
GO:0010440	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0045736	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0051726	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016538	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase regulator activity	SoyBase	N/A	ISS
GO:0019901	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase binding	SoyBase	N/A	ISS
KOG0654	KOG	G2/Mitotic-specific cyclin A	JGI		ISS
PTHR10177	Panther	CYCLINS	JGI		ISS
PTHR10177:SF49	Panther	G2/MITOTIC-SPECIFIC CYCLIN	JGI		ISS
PF00134	PFAM	Cyclin, N-terminal domain	JGI		ISS
PF02984	PFAM	Cyclin, C-terminal domain	JGI		ISS
UniRef100_I1K835	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K835_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q39877	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitotic cyclin a1-type n=1 Tax=Glycine max RepID=Q39877_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04680

Paralog	Evidence	Comments
Glyma04g04620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g043900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04680

Limit To All Plant Sequences

>Glyma06g04680.1   sequence type=CDS   gene model=Glyma06g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGACTCGCGCCGCCGCAAAGAGAAAGGCAAATGCCGCCACCATAGTCTTTGTCGAAAAACAATACCCCAACAAGAGGCAGCGGGTTGTGTTGGGTGAACTTCCCAATTTACAAAACCTTATTGTCTCCGAAACTCAAAATTCGCGCAAAGAGAAGCTCCTATGTCGGAAGAATCCCAATGAGAAGAAACCATCACCCACAAACAACAACACCTTTCCTTCCCCTCAGATCAACGAATCTTATGATTCGGATATCCACGGGTATCTTCGTGAAATGGAGATGCAGAATAAGAGAAGACCAATGGTTGACTACATTGAAAAGGTTCAGAAAATCGTTACCCCAACCATGAGAGCAATATTGGTGGATTGGTTAGTGGAGGTAGCTGTGGAGTACAAGCTTCTATCGGATACTCTTCATCTCTCTGTATCATACATCGATAGGTTTTTATCAGTTAATCCAGTCAGTAAATCCAGACTTCAGTTACTGGGTGTTTCGTCCATGCTCATTGCTGCAAAATATGAGGAGATGGATCCACCTGGTGTGGACGAGTTTTGCAGCATCACTGATCACACTTATGACAAGACAGAGGTTGTGAAGATGGAAGCTGACATACTTAAGTCCCTAAAGTTTGAAATGGGAAATCCTACTGTAAGCACCTTTCTAAGGAGGTATGCTGATGTTGCTTCTAATGACCAAAAAACTCCAAATTTGCAGATTGACTTTTTGGGCAGCTATATTGGCGAGCTAAGTTTGTTGGACTATGATTGTTTAAGATTCTTGCCTTCTATTGTGGCTGCCTCGGTTATATTTCTTGCCAAGTTCATTATCTGTCCTGAAGTGCATCCATGGACTTCTTCCTTGTGTGAATGCTCGGGTTACAAGCCAGCTGAGTTGAAAGAATGTGTCCTTATCTTGCATGACTTGTATTTGTCAAGAAAGGCAGCATCCTTCAAAGCTGTTCGGGCAAAATACAAGCAGCAAAAGTTCGAATGTGTGGCAAACCTGCCTACCCCTCCATATGTACCGAGTTGTTACTTTGAAGACCAGTGGTGCAGTGAATTCCTTGATAAATGA

Predicted protein sequences of Glyma06g04680

Limit To All Plant Sequences

>Glyma06g04680.1   sequence type=predicted peptide   gene model=Glyma06g04680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METRAAAKRKANAATIVFVEKQYPNKRQRVVLGELPNLQNLIVSETQNSRKEKLLCRKNPNEKKPSPTNNNTFPSPQINESYDSDIHGYLREMEMQNKRRPMVDYIEKVQKIVTPTMRAILVDWLVEVAVEYKLLSDTLHLSVSYIDRFLSVNPVSKSRLQLLGVSSMLIAAKYEEMDPPGVDEFCSITDHTYDKTEVVKMEADILKSLKFEMGNPTVSTFLRRYADVASNDQKTPNLQIDFLGSYIGELSLLDYDCLRFLPSIVAASVIFLAKFIICPEVHPWTSSLCECSGYKPAELKECVLILHDLYLSRKAASFKAVRAKYKQQKFECVANLPTPPYVPSCYFEDQWCSEFLDK*

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