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Report for Sequence Feature Glyma06g04670

Feature Type:gene_model
Chromosome:Gm06
Start:3307184
stop:3313835
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g04670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67320AT Annotation by Michelle Graham. TAIR10: WD-40 repeat family protein | chr5:26857268-26860974 FORWARD LENGTH=613 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0000956GO-bp Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0016575GO-bp Annotation by Michelle Graham. GO Biological Process: histone deacetylation SoyBaseN/AISS
GO:0016579GO-bp Annotation by Michelle Graham. GO Biological Process: protein deubiquitination SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005834GO-cc Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex SoyBaseN/AISS
GO:0080008GO-cc Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex SoyBaseN/AISS
KOG0273 KOG Beta-transducin family (WD-40 repeat) protein JGI ISS
PTHR22846Panther WD40 REPEAT PROTEIN JGI ISS
PTHR22846:SF2Panther TRANSDUCIN BETA-LIKE 1 JGI ISS
PF00400PFAM WD domain, G-beta repeat JGI ISS
PF08513PFAM LisH JGI ISS
UniRef100_B9SG25UniRef Annotation by Michelle Graham. Most informative UniRef hit: Polyadenylation factor subunit, putative n=1 Tax=Ricinus communis RepID=B9SG25_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002339BD3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339BD3 related cluster n=1 Tax=unknown RepID=UPI0002339BD3 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g04670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04670
ParalogEvidenceComments
Glyma04g04590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g043800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g04670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g04670
>Glyma06g04670.3   sequence type=CDS   gene model=Glyma06g04670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATCTCAATCACTTCTACTGAATTGAACTACTTAGTCTTCCGTTACCTCCACGAATCAGGTTTTACTCATTCTGCATTTGCATTCGGGTATGAAGCTGGGATTGATAAAAGCAAAAATGATGATAGTGTGGTTCCACCGGGTGCTCTTGTTACTTTCATACAGAAAGGAATTCAATATCTTGAGCTGGAAGCAAACTTGAGTGGTAGTGATGCTGACATGGATGAGGATTTTTCATTTCTACAACCTCTGGATCTTATCACAAAGGGCCCAAGTGAACTACACAATATAGTGAAAGCCAGAAAGGAAAATCTACGTCAGCATAAATTTGAATCAAATAAAATAATAAATGACTTGAGTCAGGATGACCCAAGGAGGGAGGAAACTGAGAAAGAGAGGAAAGAAAAGGAAAATGAACACACATTGGAAAAAATTAGGTTAGAGAAAGATAAGGAGCCGCCAAAGCCTGAGTATAAAGAAATACAGCACACCGATCAAAACCATACAGAGAAACCTGAAGATAAGATTACTGTCGAAAATCTAGAAAATAGAGCACAAGGAGGGGCTGAGCCAATGGAGATCTCCCAGAGCCCCATGTCGTCGCCTGATGATACTCCATGTGGTTATGTAAAACTTTTGAAAGGTCATACATCAGAGGTTTTTGCTTGTGCATGGAATCCATCAGCTCCACTTCTTGCATCTGGGTCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGATGGAGCTTGTGACTCTAGTGTGCAAAATGAACCAGTAAATGTTGTGGTGCTGCAGCACTTCAAAGAAAGCACCAATGAAAAAAGCAAGGATGTGACAACACTTGACTGGAATGGGGATGGAACACTATTGGCAACTGGTTCCTATGATGGCCAAGCAAGAATATGGAGTAGAGATGGGGAGTTGAATTGTACACTAAACAAGCACAGAGGTCCAATCTTTTCTCTAAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTGGATAAGACTGCTATTGTATGGAATATAAAGACTGTGGAATGGAAACAACTATTTGAATTTCACACCGGCCCAACTCTTGATGTTGATTGGCGAAACAATGTTTCATTTGCTACATGCTCCACTGATAAAATGATACATGTTTGCAAAATTGGAGAGAATAGACCAATCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGACCCATCAGGTTCTTTGCTGGCTTCCTGCTCCGACGATCACACTGCAAAAATATGGAGTCTAAAGCAGGACAACTTTTTGCATGATTTGAAGGAACATGTCAAGGGGATATATACAATCCGATGGAGCCCTACAGGCCCTGGTACCAACAGTCCCAATCAGCAGCTAGTACTAGCAAGTGCCTCATTCGACTCAACAATAAAGCTCTGGGATGTGGAACTAGGGAATGTACTCTACAGCTTAAATGGCCACAGGGATCCTGTATATTCCGTTGCATTCAGCCCTAATGGGGAGTACCTGGCCAGTGGCTCCATGGATAGATACCTGCATATATGGTCCGTGAAGGAGGGCAAGATTGTAAAAACATACACTGGAAAAGGTGGGATATTTGAAGTTAATTGGAACAAAGATGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATAGTTTGTGTTTTGGATTTTCGGATGTAA
Predicted protein sequences of Glyma06g04670
>Glyma06g04670.3   sequence type=predicted peptide   gene model=Glyma06g04670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISITSTELNYLVFRYLHESGFTHSAFAFGYEAGIDKSKNDDSVVPPGALVTFIQKGIQYLELEANLSGSDADMDEDFSFLQPLDLITKGPSELHNIVKARKENLRQHKFESNKIINDLSQDDPRREETEKERKEKENEHTLEKIRLEKDKEPPKPEYKEIQHTDQNHTEKPEDKITVENLENRAQGGAEPMEISQSPMSSPDDTPCGYVKLLKGHTSEVFACAWNPSAPLLASGSGDSTARIWKIADGACDSSVQNEPVNVVVLQHFKESTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELNCTLNKHRGPIFSLKWNKKGDYLLSGSVDKTAIVWNIKTVEWKQLFEFHTGPTLDVDWRNNVSFATCSTDKMIHVCKIGENRPIKTFSGHQDEVNAIKWDPSGSLLASCSDDHTAKIWSLKQDNFLHDLKEHVKGIYTIRWSPTGPGTNSPNQQLVLASASFDSTIKLWDVELGNVLYSLNGHRDPVYSVAFSPNGEYLASGSMDRYLHIWSVKEGKIVKTYTGKGGIFEVNWNKDGDKVAACFSNNIVCVLDFRM*






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