Glyma06g04620 - SoyBase

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Report for Sequence Feature Glyma06g04620

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3278758
stop:	3283475
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02740	AT	Annotation by Michelle Graham. TAIR10: MRG family protein \| chr1:599734-602021 REVERSE LENGTH=327	SoyBase	E_val: 5.00E-106	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR10880	Panther	MALE-SPECIFIC LETHAL-3 - RELATED	JGI		ISS
PTHR10880:SF15	Panther	MORTALITY FACTOR 4-LIKE PROTEIN 1	JGI		ISS
PF05712	PFAM	MRG	JGI		ISS
PF11717	PFAM	RNA binding activity-knot of a chromodomain	JGI		ISS
UniRef100_B9SG10	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chromatin binding protein, putative n=1 Tax=Ricinus communis RepID=B9SG10_RICCO	SoyBase	E_val: 2.00E-105	ISS
UniRef100_I1K828	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K828_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04620

Paralog	Evidence	Comments
Glyma04g04530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g043300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g04620

Limit To All Plant Sequences

>Glyma06g04620.2   sequence type=transcript   gene model=Glyma06g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCGGTAAAATATTGAATTATTTCCATTGAGATAAAGTGGGTGTTTCCGATGGTTGATGAAAATGGAGAAGAAAATAAGAGGAGACAACAGATACATCCTTGGTTGGCTCTGGGTTTAAGGAGGGAAATTGATTCTTGTTCTTTGGGAAGGATAAGGAATCAATCTGATCGCTGGAAGAGAGGAAGTAGCAATAGTAATGGAAATGGGGATTTCCAAGACGACAACAAAAACAAGCACTGAGGTTACCGACAACAATTCCAATTCCAATAGCAATAGCAGCAGCACCACTCAGACTGAAACTGACAACCATATCTCCGTTGCTGCTCCCTACGCCGTAGGAGAAAAGGTCTTAGTCTATCACTCTGATTGTCTTTACGAAGCCAAGCTGAGGCAAGCTGAGTACCACAACACTAAAGGCTGGCACTTCCTCGTTCATTATCTTGGTTGGAAGAAGAGTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGAAAAACCTGCAGTTGATCTTGAAAAGCTTGTCAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCCCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTTGATGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTTGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCACCAACAGTACCAAGAGGCTTGTCCAGCGAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGGTATGCTCGTTTGTCTGCCACAAGACGAGCTTATTATATGATGGGTTTCAAGTTCAACTTTTTGTTAGTTTGTCATAACTCGACTCATTGTGGCATCAAGTTGTAATGGAAATGCAGATGGTAGTGTGGTTATTATGCCCTTTGTGGACAGCAAAATGCTGGCCCTTTGGGTTCAGGCTTGCATGAGTTTATTGCTATATGCTCATGGTTTTGTCAAAGTCTTTTTTCTGTAGAGCTTTATTATTATGTTTTCCAATACTTTGGGATTCTAATTACCGGTGCCTTTTTTCTTTTCTTGATTTGAATTTTGAAGTTAAGTTGCCCGAGTTATTGTTTCATGCTAGCATTGAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAGGAGACTAGGCTTGTGGACAACAATTGTTTTTGCTATGTACATAGTTTCACAGAGCTGCTGCTGTATACAATGCTTGTCACAATTGCAGTTTACTTTCTTCATCAAAATGATGTGAAATCAGATTTGGTAAGTGTATAACTTAGCTTTGGGAACTCAATGTTTTCAGGGTTCAGGGAGTGTAACTTCTACGGAAGGAATATGCACCGACCCTCAATTTTAAACACCAGTTGGTTTTCTGAAATTTTAGATTTAATATGTTTTTCACAGTCCAACCAACCAACCAAATTCTATCGATGAAATCTTAGTTCAATTTAATATTGTTTTATCTTTGTGTGTGTGATGATTGGTTCCTAACTTCCTACCACAGTCCCGTGCATTTTGAATTTTATGCATACAAATTAGATAAATGTGAATGATGTGATAGTTGTAAAAAAACTCCGACTCTAATGTTTAACTTAGCAAAGGGTTTTGTAAGTATAAAAGGATATGAGATTGGAAGATCATACGTGAGATTCTACTTTCTTTTATAGTGATTTGTTATGAAAGATATGAG

>Glyma06g04620.3   sequence type=transcript   gene model=Glyma06g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCGGTAAAATATTGAATTATTTCCATTGAGATAAAGTGGGTGTTTCCGATGGTTGATGAAAATGGAGAAGAAAATAAGAGGAGACAACAGATACATCCTTGGTTGGCTCTGGGTTTAAGGAGGGAAATTGATTCTTGTTCTTTGGGAAGGATAAGGAATCAATCTGATCGCTGGAAGAGAGGAAGTAGCAATAGTAATGGAAATGGGGATTTCCAAGACGACAACAAAAACAAGCACTGAGGTTACCGACAACAATTCCAATTCCAATAGCAATAGCAGCAGCACCACTCAGACTGAAACTGACAACCATATCTCCGTTGCTGCTCCCTACGCCGTAGGAGAAAAGGTCTTAGTCTATCACTCTGATTGTCTTTACGAAGCCAAGCTGAGGCAAGCTGAGTACCACAACACTAAAGGCTGGCACTTCCTCGTTCATTATCTTTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGAAAAACCTGCAGTTGATCTTGAAAAGCTTGTCAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCCCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTTGATGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTTGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCACCAACAGTACCAAGAGGCTTGTCCAGCGAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGTTAAGTTGCCCGAGTTATTGTTTCATGCTAGCATTGAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAGGAGACTAGGCTTGTGGACAACAATTGTTTTTGCTATGTACATAGTTTCACAGAGCTGCTGCTGTATACAATGCTTGTCACAATTGCAGTTTACTTTCTTCATCAAAATGATGTGAAATCAGATTTGGTAAGTGTATAACTTAGCTTTGGGAACTCAATGTTTTCAGGGTTCAGGGAGTGTAACTTCTACGGAAGGAATATGCACCGACCCTCAATTTTAAACACCAGTTGGTTTTCTGAAATTTTAGATTTAATATGTTTTTCACAGTCCAACCAACCAACCAAATTCTATCGATGAAATCTTAGTTCAATTTAATATTGTTTTATCTTTGTGTGTGTGATGATTGGTTCCTAACTTCCTACCACAGTCCCGTGCATTTTGAATTTTATGCATACAAATTAGATAAATGTGAATGATGTGATAGTTGTAAAAAAACTCCGACTCTAATGTTTAACTTAGCAAAGGGTTTTGTAAGTATAAAAGGATATGAGATTGGAAGATCATACGTGAGATTCTACTTTCTTTTATAGTGATTTGTTATGAAAGATATGAG

Coding sequences of Glyma06g04620

Limit To All Plant Sequences

>Glyma06g04620.1   sequence type=CDS   gene model=Glyma06g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGGGGATTTCCAAGACGACAACAAAAACAAGCACTGAGGTTACCGACAACAATTCCAATTCCAATAGCAATAGCAGCAGCACCACTCAGACTGAAACTGACAACCATATCTCCGTTGCTGCTCCCTACGCCGTAGGAGAAAAGGTCTTAGTCTATCACTCTGATTGTCTTTACGAAGCCAAGCTGAGGCAAGCTGAGTACCACAACACTAAAGGCTGGCACTTCCTCGTTCATTATCTTGGTTGGAAGAAGAGTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGAAAAACCTGCAGTTGATCTTGAAAAGCTTGTCAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCCCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTTGATGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTTGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCACCAACAGTACCAAGAGGCTTGTCCAGCGAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGTTAAGTTGCCCGAGTTATTGTTTCATGCTAGCATTGAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAGGAGACTAG

>Glyma06g04620.2   sequence type=CDS   gene model=Glyma06g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATGGGGATTTCCAAGACGACAACAAAAACAAGCACTGAGGTTACCGACAACAATTCCAATTCCAATAGCAATAGCAGCAGCACCACTCAGACTGAAACTGACAACCATATCTCCGTTGCTGCTCCCTACGCCGTAGGAGAAAAGGTCTTAGTCTATCACTCTGATTGTCTTTACGAAGCCAAGCTGAGGCAAGCTGAGTACCACAACACTAAAGGCTGGCACTTCCTCGTTCATTATCTTGGTTGGAAGAAGAGTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGAAAAACCTGCAGTTGATCTTGAAAAGCTTGTCAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCCCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTTGATGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTTGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCACCAACAGTACCAAGAGGCTTGTCCAGCGAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGGTATGCTCGTTTGTCTGCCACAAGACGAGCTTATTATATGA

>Glyma06g04620.3   sequence type=CDS   gene model=Glyma06g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACACACTGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAATGCAAAAATCCCGCGTGGTTCTCTGGCTAAGTCCAAGACCACTAACGTTTCAAGAGGCAGGAAACGAAGGAATGAATCTGTCATCAAGGAAAAACCTGCAGTTGATCTTGAAAAGCTTGTCAACATTCAAATTCCTCCAACACTAAAGAAACAATTAGTTGATGATTGTGAGTTTATTACCCATCTCGGCAAGCTTGTTAAACTCCCCCGTACTCCTAATGTGAAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTTGATGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTTGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCACCAACAGTACCAAGAGGCTTGTCCAGCGAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGTTAAGTTGCCCGAGTTATTGTTTCATGCTAGCATTGAAGAGAAGACATTGGTGGAACTTCAAGCACACTTAATTGACTTTCTCAGGTTCTTGCAAAAAAACCAGAGCACATTCTTCCTTTCTACTTATCATGTTGCAGAAGGTATTGAGAACAGCACCAACAAACAAGGAGACTAG

Predicted protein sequences of Glyma06g04620

Limit To All Plant Sequences

>Glyma06g04620.1   sequence type=predicted peptide   gene model=Glyma06g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMGISKTTTKTSTEVTDNNSNSNSNSSSTTQTETDNHISVAAPYAVGEKVLVYHSDCLYEAKLRQAEYHNTKGWHFLVHYLGWKKSWDEWLDLDRLMKHTEENMRKKHDLDEKLGNDKNAKIPRGSLAKSKTTNVSRGRKRRNESVIKEKPAVDLEKLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRLKKCGLMGDSVEEIMKGLSCYFDKALPVMLLYKNEHQQYQEACPANVFPSAIYGAEHLLRLFVKLPELLFHASIEEKTLVELQAHLIDFLRFLQKNQSTFFLSTYHVAEGIENSTNKQGD*

>Glyma06g04620.2   sequence type=predicted peptide   gene model=Glyma06g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMGISKTTTKTSTEVTDNNSNSNSNSSSTTQTETDNHISVAAPYAVGEKVLVYHSDCLYEAKLRQAEYHNTKGWHFLVHYLGWKKSWDEWLDLDRLMKHTEENMRKKHDLDEKLGNDKNAKIPRGSLAKSKTTNVSRGRKRRNESVIKEKPAVDLEKLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRLKKCGLMGDSVEEIMKGLSCYFDKALPVMLLYKNEHQQYQEACPANVFPSAIYGAEHLLRLFGMLVCLPQDELII*

>Glyma06g04620.3   sequence type=predicted peptide   gene model=Glyma06g04620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKHTEENMRKKHDLDEKLGNDKNAKIPRGSLAKSKTTNVSRGRKRRNESVIKEKPAVDLEKLVNIQIPPTLKKQLVDDCEFITHLGKLVKLPRTPNVKGILKNYFDYRLKKCGLMGDSVEEIMKGLSCYFDKALPVMLLYKNEHQQYQEACPANVFPSAIYGAEHLLRLFVKLPELLFHASIEEKTLVELQAHLIDFLRFLQKNQSTFFLSTYHVAEGIENSTNKQGD*

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