Glyma06g04590 - SoyBase

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Report for Sequence Feature Glyma06g04590

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3258720
stop:	3260537
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16150	AT	Annotation by Michelle Graham. TAIR10: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein \| chr3:5471794-5473033 FORWARD LENGTH=325	SoyBase	E_val: 0	ISS
GO:0006516	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycoprotein catabolic process	SoyBase	N/A	ISS
GO:0033345	GO-bp	Annotation by Michelle Graham. GO Biological Process: asparagine catabolic process via L-aspartate	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004067	GO-mf	Annotation by Michelle Graham. GO Molecular Function: asparaginase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1592	KOG	Asparaginase	JGI		ISS
PTHR10188	Panther	PROTEASE T2 ASPARAGINASE	JGI		ISS
PF01112	PFAM	Asparaginase	JGI		ISS
UniRef100_I1K824	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K824_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2PW34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: L-asparaginase 2 n=1 Tax=Phaseolus vulgaris RepID=Q2PW34_PHAVU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04590

Paralog	Evidence	Comments
Glyma04g04470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g043000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04590

Limit To All Plant Sequences

>Glyma06g04590.1   sequence type=CDS   gene model=Glyma06g04590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGGTTGGGCTATAGCGGTGCATGGTGGCGCGGGTGTGGACCCTAATCTTCCACCAGAGCGTCAAGAGCAAGCCAAACAACTCCTCACTCGCGTTCTCAATCTTGGCATCTCTGCCCTTCGTTCCGATGCTTCTGCCCTCGACGTCGTCGAACTTGTCGTACGGGAACTGGAAACAGATCCCCTGTTCAACTCTGGTCGCGGAGCAGCTCTGACAGAAAAGGGAACAGCGGAATTGGAAGCAAGCATCATGGATGGTTACAAGAGACGATGCGGCGCCGTTTCGGGCGTCACCACCGTCAAAAATCCTATCTCACTCGCTCGTCTTGTCATGGAAAAGTCACCCCACTCCTACCTCGCCTTTAACGGCGCTGAAGATTTCGCCAGACAACAGGGAGTGGAGATTGTGGAGAACGAATACTTCATCACTCCTGAAAATGTTGGTATGCTGAAACTGGCAAAGGAAGCAAACACAATCCTGTTTGATTATAGGGTGCCATTGCAAAATGGATACGATAACTGCGGTGTGGAGGTTGAGAATCCATTGCAAATGAATGGACTGCCAATAAGCGTGTACGCGCCGGAGACGGTGGGGTGCGTGGTGGTGGACAGCGAGGGACGGTGCGCGGCTGCCACGTCGACAGGAGGGTTGATGAACAAGAAGTGCGGTAGGATCGGTGACTCACCACTAATAGGTGCAGGGACTTACGCGTGTAAGGTGTGTGGGGTTTCGTGCACTGGTGAAGGAGAAGCTATAATACGTGGCACGCTGGCGCGTGAGGTGGCAGCGGTGATGGAATATAAAGGACTGGGACTTGAGGAGGCAGTGGAGTATGTGATGGAGCACCGTTTGGATGGAGGGAAGGCAGGGTTGATCGCCGTGTCAAGTTCTGGTGAGGTGGCCTATGGATTCAACTCTAATGCAATGTTCAGGGCATGCGCCACCCAGGATGGATTCATGGAGGTTGGAATCTGGGAATAA

Predicted protein sequences of Glyma06g04590

Limit To All Plant Sequences

>Glyma06g04590.1   sequence type=predicted peptide   gene model=Glyma06g04590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGWAIAVHGGAGVDPNLPPERQEQAKQLLTRVLNLGISALRSDASALDVVELVVRELETDPLFNSGRGAALTEKGTAELEASIMDGYKRRCGAVSGVTTVKNPISLARLVMEKSPHSYLAFNGAEDFARQQGVEIVENEYFITPENVGMLKLAKEANTILFDYRVPLQNGYDNCGVEVENPLQMNGLPISVYAPETVGCVVVDSEGRCAAATSTGGLMNKKCGRIGDSPLIGAGTYACKVCGVSCTGEGEAIIRGTLAREVAAVMEYKGLGLEEAVEYVMEHRLDGGKAGLIAVSSSGEVAYGFNSNAMFRACATQDGFMEVGIWE*

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